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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
62751-62800 / 86044 show all
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.3405
95.3885
93.3153
37.1067
637130812759914716
78.3370
ckim-dragenSNPtvfunc_cds*
99.3521
99.9771
98.7347
37.1039
437014370560
0.0000
ghariani-varprowlSNPtiHG002compoundhethomalt
92.9457
99.8242
86.9540
37.0935
73811373851108880
79.4224
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2372
98.7305
99.7490
37.0877
71559271541818
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5098
99.3105
99.7100
37.0828
106587410658312
6.4516
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
80.0119
67.3889
98.4536
37.0811
62230157399
100.0000
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.4544
99.0741
99.8377
37.0787
7383697380123
25.0000
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
48.2780
92.0474
32.7195
37.0781
108894122625212349
93.1773
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
37.0751
27562275622
100.0000
bgallagher-sentieonINDELI6_15HG002compoundhet*
93.1478
91.3856
94.9793
37.0668
80207568021424422
99.5283
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.1695
90.0530
98.6804
37.0620
238126323933228
87.5000
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2664
99.8896
98.6509
37.0615
7239872399998
98.9899
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.0316
99.5706
98.4983
37.0609
74203274121132
1.7699
egarrison-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.4319
99.1366
99.7290
37.0539
18026157180314928
57.1429
ltrigg-rtg2SNPtiHG002compoundhethet
99.3400
99.0005
99.6817
37.0509
9410959396308
26.6667
hfeng-pmm3INDEL*func_cdshomalt
100.0000
100.0000
100.0000
37.0474
226022600
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.0047
94.2890
99.8816
37.0370
2493151253033
100.0000
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
64.4294
85.0889
51.8421
37.0340
4354763433440263730
92.6478
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
73.6947
65.2837
84.5936
37.0238
771410895163163
100.0000
hfeng-pmm2INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.0701
96.2133
100.0000
37.0181
124549135600
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
51.3203
40.1741
71.0262
37.0164
9691443474119341923
99.4312
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.1845
98.5711
99.8055
37.0083
462267461990
0.0000
gduggal-bwafbSNPtvfunc_cds*
99.4763
99.9542
99.0029
37.0021
436924369440
0.0000
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_quadTR_11to50het
98.8844
98.3152
99.4603
36.9967
4610794607250
0.0000
ciseli-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
94.7390
98.1567
91.5513
36.9925
383472383635436
10.1695
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
98.9247
97.8723
100.0000
36.9863
4614600
jmaeng-gatkSNP*func_cdshet
99.1816
99.9283
98.4461
36.9727
111538111501761
0.5682
astatham-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9433
96.4451
99.4887
36.9705
124846136277
100.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2867
99.8758
98.7045
36.9692
7238972389594
98.9474
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2867
99.8758
98.7045
36.9692
7238972389594
98.9474
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
40.2163
27.6358
73.8220
36.9637
3469061415012
24.0000
anovak-vgINDELI16_PLUS*homalt
55.6761
71.2364
45.6948
36.9604
1112449114113561055
77.8024
anovak-vgSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
97.9824
97.9405
98.0243
36.9430
12842712902613
50.0000
qzeng-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
95.5179
97.5818
93.5395
36.9311
6861713619410
10.6383
ckim-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.2704
87.7615
99.5173
36.9269
335646835051717
100.0000
ckim-vqsrINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.2704
87.7615
99.5173
36.9269
335646835051717
100.0000
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
85.9606
75.6948
99.4477
36.9246
266985725211412
85.7143
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
85.9606
75.6948
99.4477
36.9246
266985725211412
85.7143
qzeng-customINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
97.4130
95.2329
99.6951
36.9231
8794432711
100.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.5073
99.5362
99.4784
36.9220
3434163433185
27.7778
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
89.6142
93.7888
85.7955
36.9176
151101512525
100.0000
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
96.4687
96.5227
96.4148
36.9062
69952526992260103
39.6154
ckim-isaacSNPtiHG002compoundhethet
88.4015
80.2104
98.4558
36.9008
76241881790612419
15.3226
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0051
98.4010
99.6166
36.8952
46777646771817
94.4444
hfeng-pmm2INDELI6_15HG002compoundhet*
95.0368
93.1632
96.9873
36.8937
81766008177254252
99.2126
hfeng-pmm1INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.1102
96.2906
100.0000
36.8910
124648136000
ckim-isaacSNPtvHG002compoundhethomalt
88.3010
79.3093
99.5923
36.8889
268770126871111
100.0000
jli-customSNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
36.8852
308230800
jli-customSNPtvHG002complexvarhetalt
99.6764
99.3548
100.0000
36.8852
308230800
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
36.4602
27.1762
55.3790
36.8827
25668613591095912
83.2877