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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
62551-62600 / 86044 show all
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
95.4545
100.0000
91.3043
37.8378
2102122
100.0000
raldana-dualsentieonINDELI6_15func_cdshet
97.8723
95.8333
100.0000
37.8378
2312300
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.3157
84.9354
98.7324
37.8284
59210570199
100.0000
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
47.1342
38.1966
61.5321
37.8247
26394270521332592660
81.6201
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
39.5158
40.0000
39.0432
37.8119
132198253395347
87.8481
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.3466
87.9938
99.3929
37.8101
1136155114677
100.0000
raldana-dualsentieonINDELD16_PLUS*hetalt
96.3126
93.0160
99.8515
37.8079
1798135201733
100.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.2342
85.6776
99.8774
37.7987
2333390244433
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7972
99.8841
99.7104
37.7838
344643443102
20.0000
ghariani-varprowlINDELD16_PLUSHG002compoundhet*
18.0085
15.8906
20.7778
37.7809
372196937414261417
99.3689
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
96.4992
99.3239
93.8307
37.7780
7198497194473470
99.3658
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.8234
88.7991
99.4503
37.7718
241830525331413
92.8571
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.3962
98.9698
99.8262
37.7685
403542402072
28.5714
raldana-dualsentieonINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
94.8996
90.3444
99.9384
37.7684
1600171162211
100.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.3087
93.0088
99.8513
37.7661
1796135201433
100.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.3087
93.0088
99.8513
37.7661
1796135201433
100.0000
ckim-isaacINDELI1_5HG002compoundhethetalt
90.1858
82.6071
99.2955
37.7647
9233194491626555
84.6154
qzeng-customINDELI6_15lowcmp_SimpleRepeat_triTR_11to50het
94.3253
97.5410
91.3148
37.7628
1193757724
5.5556
rpoplin-dv42SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8741
99.9407
99.8075
37.7626
674146741135
38.4615
jlack-gatkINDELI6_15HG002compoundhet*
90.8429
89.0155
92.7469
37.7522
78129647813611606
99.1817
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.6552
88.4686
99.4878
37.7483
240931425251313
100.0000
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.1925
89.2396
99.7275
37.7439
6227573222
100.0000
gduggal-bwavardINDELD1_5func_cds*
94.6708
94.9686
94.3750
37.7432
151815197
77.7778
anovak-vgINDELD1_5func_cds*
92.1630
92.4528
91.8750
37.7432
14712147139
69.2308
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
84.9703
74.2812
99.2529
37.7409
93032293077
100.0000
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
53.8464
67.1975
44.9213
37.7402
633309219826952403
89.1651
gduggal-snapvardSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3473
97.2572
99.4621
37.7380
656018564723518
51.4286
hfeng-pmm3SNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.5585
99.2191
99.9003
37.7315
1804114218038186
33.3333
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.0716
89.6700
98.9276
37.7295
6257273888
100.0000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
30.0306
17.9045
93.0510
37.7282
85139028576462
96.8750
raldana-dualsentieonSNPti*hetalt
99.7420
99.6564
99.8279
37.7278
580258011
100.0000
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.8994
96.0896
99.7786
37.7218
17545714175773937
94.8718
jli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.5097
99.6726
99.3473
37.7178
213172131142
14.2857
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
91.2907
89.1727
93.5118
37.7146
1836622301906813231081
81.7082
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
62.0711
51.5528
77.9817
37.7143
8378852422
91.6667
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
51.0479
89.1961
35.7556
37.7138
1742211173231122889
92.8342
gduggal-bwavardINDELD6_15HG002compoundhet*
10.9462
9.3899
13.1210
37.7051
848818383255095456
99.0379
ltrigg-rtg1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.5208
90.5397
98.8682
37.7022
149315614851717
100.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
78.4355
65.1515
98.5240
37.7011
30116126743
75.0000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.2051
98.7842
99.6296
37.6999
11294139112964220
47.6190
hfeng-pmm2SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.6074
99.3012
99.9156
37.6986
10657751065790
0.0000
egarrison-hhgaSNPtiHG002compoundhethet
98.7211
97.8643
99.5931
37.6968
930220393003821
55.2632
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
63.3251
46.6890
98.3795
37.6873
2228254418823128
90.3226
hfeng-pmm3INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
98.7654
97.5610
100.0000
37.6838
320833900
asubramanian-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1850
95.5951
98.8287
37.6825
12375713501614
87.5000
ndellapenna-hhgaINDELD1_5func_cdshet
99.4152
100.0000
98.8372
37.6812
8508510
0.0000
gduggal-bwavardINDELI6_15func_cds*
84.8678
83.7209
86.0465
37.6812
3673766
100.0000
ghariani-varprowlINDELI6_15func_cds*
83.7209
83.7209
83.7209
37.6812
3673677
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
44.9406
29.0138
99.6337
37.6712
25361927211
100.0000
eyeh-varpipeINDELI16_PLUSHG002complexvarhomalt
76.6428
68.6084
86.8085
37.6658
212972043130
96.7742