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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1247 1248 1249 1250 1251 1252 1253 1254 1255 ... 1720 1721 » 62501-62550 / 86044 show all
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.3523	89.5265	99.7279	38.0270	624	73	733	2	2	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7654	97.5610	100.0000	38.0256	320	8	339	0	0
jpowers-varprowl	INDEL	D6_15	HG002compoundhet	*	9.9769	8.5262	12.0225	38.0227	770	8261	768	5620	5568	99.0747
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.5286	98.5711	98.4861	38.0204	4622	67	4619	71	0	0.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.0284	92.9570	99.3097	38.0196	1795	136	2014	14	14	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.0284	92.9570	99.3097	38.0196	1795	136	2014	14	14	100.0000
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	89.4360	81.0127	99.8141	38.0184	512	120	537	1	1	100.0000
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.2685	99.7898	98.7526	38.0155	1424	3	1425	18	3	16.6667
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3339	99.0472	99.6223	38.0132	7381	71	7385	28	18	64.2857
jpowers-varprowl	INDEL	I6_15	HG002compoundhet	het	6.7114	57.6923	3.5629	37.9971	120	88	150	4060	4050	99.7537
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6122	99.3198	99.9063	37.9962	10659	73	10659	10	4	40.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9638	100.0000	99.9275	37.9915	2758	0	2758	2	2	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.0531	89.5265	99.0617	37.9884	624	73	739	7	7	100.0000
jli-custom	INDEL	D1_5	func_cds	*	99.6865	100.0000	99.3750	37.9845	159	0	159	1	0	0.0000
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	84.9953	81.8023	88.4476	37.9806	16848	3748	16836	2199	2149	97.7262
ckim-dragen	INDEL	*	func_cds	homalt	99.7792	100.0000	99.5595	37.9781	226	0	226	1	1	100.0000
ltrigg-rtg2	SNP	*	HG002compoundhet	*	99.3639	98.9737	99.7572	37.9767	25557	265	25473	62	19	30.6452
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	hetalt	54.3418	37.6000	97.9592	37.9747	47	78	48	1	1	100.0000
ghariani-varprowl	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.8634	100.0000	97.7524	37.9730	2738	0	2740	63	41	65.0794
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.0029	89.2396	97.0976	37.9705	622	75	736	22	18	81.8182
ckim-isaac	SNP	*	tech_badpromoters	het	91.6667	85.7143	98.5075	37.9630	66	11	66	1	0	0.0000
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	90.6524	84.2181	98.1513	37.9562	587	110	584	11	11	100.0000
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.5950	86.3019	99.8782	37.9441	2350	373	2460	3	3	100.0000
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	55.2595	38.9041	95.3409	37.9408	852	1338	839	41	31	75.6098
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	88.3435	79.5079	99.3884	37.9338	2165	558	2275	14	13	92.8571
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	77.1180	63.2035	98.8889	37.9310	292	170	267	3	3	100.0000
mlin-fermikit	INDEL	D1_5	tech_badpromoters	*	91.8919	89.4737	94.4444	37.9310	17	2	17	1	1	100.0000
jlack-gatk	INDEL	D16_PLUS	*	hetalt	94.8361	90.8432	99.1960	37.9289	1756	177	1974	16	15	93.7500
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.9407	91.2482	98.9446	37.9197	636	61	750	8	8	100.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	43.0132	41.0316	45.1960	37.9193	1599	2298	2225	2698	2406	89.1772
cchapple-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	98.1374	97.6583	98.6213	37.9185	2669	64	8083	113	105	92.9204
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3427	99.6095	99.0772	37.9144	18112	71	18145	169	3	1.7752
hfeng-pmm2	INDEL	*	func_cds	homalt	100.0000	100.0000	100.0000	37.9121	226	0	226	0	0
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	77.3091	63.7658	98.1567	37.9113	403	229	426	8	7	87.5000
eyeh-varpipe	INDEL	I16_PLUS	HG002compoundhet	*	16.3932	10.4060	38.6054	37.9092	223	1920	227	361	360	99.7230
egarrison-hhga	INDEL	I6_15	*	hetalt	95.1738	91.5448	99.1023	37.9004	7828	723	7838	71	63	88.7324
asubramanian-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.0021	98.8951	99.1093	37.8896	4565	51	4562	41	2	4.8781
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	81.1375	80.9173	81.3588	37.8886	3299	778	3365	771	561	72.7626
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	87.5446	82.8245	92.8353	37.8851	3337	692	1516	117	56	47.8632
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.2146	96.7797	99.6928	37.8817	4538	151	4543	14	2	14.2857
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.7059	90.8178	98.9418	37.8800	633	64	748	8	8	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1511	98.7248	99.5812	37.8775	6658	86	6657	28	16	57.1429
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3742	98.8879	99.8652	37.8733	6669	75	6669	9	0	0.0000
asubramanian-gatk	INDEL	I6_15	HG002compoundhet	*	93.0480	91.1691	95.0059	37.8731	8001	775	8009	421	405	96.1995
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	63.5738	47.4907	96.1285	37.8710	1022	1130	1167	47	44	93.6170
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	89.5684	81.4873	99.4286	37.8698	515	117	522	3	3	100.0000
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	82.8608	81.8751	83.8705	37.8607	16863	3733	16941	3258	3048	93.5543
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.8587	90.8856	99.1952	37.8556	1755	176	1972	16	15	93.7500
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.8587	90.8856	99.1952	37.8556	1755	176	1972	16	15	93.7500
gduggal-bwavard	INDEL	I6_15	HG002compoundhet	*	2.5796	2.0283	3.5425	37.8475	178	8598	179	4874	4796	98.3997

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