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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
62451-62500 / 86044 show all
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
38.2353
2102100
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
38.2353
2102100
hfeng-pmm1INDELI6_15func_cds*
98.8235
97.6744
100.0000
38.2353
4214200
jli-customINDELI6_15func_cds*
96.4706
95.3488
97.6190
38.2353
4124111
100.0000
ghariani-varprowlSNPtvfunc_cds*
99.2142
99.6568
98.7755
38.2266
4356154356545
9.2593
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
98.3344
97.5610
99.1202
38.2246
320833833
100.0000
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.8050
86.0815
98.3438
38.2217
234437924944235
83.3333
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.7905
86.5506
100.0000
38.2131
5478557400
ciseli-customINDELI1_5func_cdshet
78.5185
89.8305
69.7368
38.2114
536532313
56.5217
mlin-fermikitSNPtiHG002compoundhethet
93.4304
88.3535
99.1262
38.1960
8398110783957414
18.9189
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
88.0705
92.7235
83.8622
38.1946
6193486618411901162
97.6471
ckim-gatkINDELD16_PLUS*hetalt
96.6957
94.2059
99.3207
38.1824
182111220471414
100.0000
ckim-vqsrINDELD16_PLUS*hetalt
96.6957
94.2059
99.3207
38.1824
182111220471414
100.0000
mlin-fermikitSNP*tech_badpromotershet
92.4138
87.0130
98.5294
38.1818
67106710
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
98.1780
97.2561
99.1176
38.1818
319933733
100.0000
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
63.9710
53.3687
79.8301
38.1774
7056162632665660
99.2481
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50het
92.5067
90.7170
94.3684
38.1735
1429714632577215381472
95.7087
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
73.5572
58.5593
98.8827
38.1693
75653570888
100.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7253
99.7681
99.6824
38.1649
344283453114
36.3636
dgrover-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
98.4903
97.8659
99.1228
38.1555
321733933
100.0000
ltrigg-rtg2INDEL*func_cdshet
99.0654
99.0654
99.0654
38.1503
212221220
0.0000
anovak-vgSNPtitech_badpromoters*
89.2841
83.5294
95.8904
38.1356
71147033
100.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.3788
99.6180
99.1407
38.1189
106914110730931
1.0753
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.9325
86.8895
99.8788
38.1155
2366357247333
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.7195
94.2517
99.3201
38.1124
182011120451414
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.7195
94.2517
99.3201
38.1124
182011120451414
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.7195
94.2517
99.3201
38.1124
182011120451414
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.7195
94.2517
99.3201
38.1124
182011120451414
100.0000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.0758
99.7696
98.3916
38.1103
389793854636
9.5238
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
38.0952
1201300
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
38.0952
1301300
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.6741
97.8739
73.0725
38.0893
6537142694725602496
97.5000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.6342
97.8003
99.4823
38.0876
115626115366
100.0000
qzeng-customSNPtiHG002compoundhethomalt
98.8966
98.7963
98.9971
38.0829
73058954295541
74.5455
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
62.0279
93.0174
46.5270
38.0827
2944221295433953317
97.7025
jlack-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.4965
99.7175
99.2765
38.0786
247172470181
5.5556
hfeng-pmm1INDELD1_5func_cds*
99.6885
100.0000
99.3789
38.0769
159016010
0.0000
ckim-isaacSNP*HG002compoundhet*
87.4314
80.5166
95.6453
38.0766
20791503121327971803
82.6982
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
98.3434
99.6186
97.1004
38.0755
1306513063935
89.7436
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.6549
99.4561
99.8544
38.0748
274315274344
100.0000
jmaeng-gatkINDELD16_PLUS*hetalt
96.0050
92.9126
99.3103
38.0720
179613720161414
100.0000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
80.1588
67.7444
98.1441
38.0663
9014298991716
94.1176
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
87.8398
78.3163
100.0000
38.0563
61417068200
ckim-dragenINDELI6_15*hetalt
95.5238
91.4630
99.9619
38.0544
7821730786133
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
96.9627
94.4899
99.5685
38.0503
34642023461159
60.0000
jli-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.7582
92.5128
99.2395
38.0448
90273104488
100.0000
bgallagher-sentieonINDELI6_15*hetalt
95.3960
91.2291
99.9618
38.0362
7801750784133
100.0000
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6187
99.3868
99.8516
38.0325
405225403862
33.3333
raldana-dualsentieonSNPtiHG002compoundhethet
96.7997
93.8769
99.9104
38.0325
8923582892484
50.0000
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
96.7273
93.6620
100.0000
38.0282
133913200