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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1245 1246 1247 1248 1249 1250 1251 1252 1253 ... 1720 1721 » 62401-62450 / 86044 show all
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	54.6126	50.3907	59.6067	38.4218	16121	15871	22551	15282	11968	78.3144
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.3439	99.7585	96.9689	38.4203	7434	18	7454	233	3	1.2876
anovak-vg	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	het	43.8638	34.2213	61.0721	38.4199	167	321	1390	886	815	91.9865
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.8869	99.6041	98.1799	38.4191	10316	41	10303	191	187	97.9058
gduggal-snapfb	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	65.7529	52.8540	86.9801	38.4187	963	859	481	72	43	59.7222
anovak-vg	INDEL	I16_PLUS	HG002compoundhet	homalt	35.7724	100.0000	21.7822	38.4146	3	0	44	158	97	61.3924
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	95.5845	92.0383	99.4149	38.4055	15375	1330	15461	91	90	98.9011
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	95.5845	92.0383	99.4149	38.4055	15375	1330	15461	91	90	98.9011
raldana-dualsentieon	SNP	*	*	hetalt	99.7125	99.5408	99.8848	38.3960	867	4	867	1	1	100.0000
raldana-dualsentieon	SNP	tv	*	hetalt	99.7125	99.5408	99.8848	38.3960	867	4	867	1	1	100.0000
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	87.8983	88.3895	87.4126	38.3916	236	31	1125	162	161	99.3827
ciseli-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	97.2393	99.5982	94.9895	38.3851	2727	11	2711	143	53	37.0629
raldana-dualsentieon	INDEL	I1_5	func_cds	het	97.5068	98.3051	96.7213	38.3838	58	1	59	2	0	0.0000
anovak-vg	SNP	ti	HG002compoundhet	*	77.8164	75.3290	80.4737	38.3806	13166	4312	13522	3281	2578	78.5736
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	96.9804	94.2019	99.9277	38.3793	1381	85	1383	1	1	100.0000
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	62.7001	46.0184	98.3531	38.3761	2196	2576	1911	32	29	90.6250
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	88.9417	80.9524	98.6807	38.3740	374	88	374	5	2	40.0000
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	48.8008	44.4493	54.0968	38.3719	8116	10143	8068	6846	6736	98.3932
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	38.3689	1330	0	1330	0	0
qzeng-custom	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	88.2413	79.4231	99.2621	38.3627	2478	642	3094	23	17	73.9130
ltrigg-rtg1	SNP	*	HG002compoundhet	*	98.7318	97.7074	99.7779	38.3623	25230	592	25160	56	17	30.3571
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	97.8903	96.4792	99.3433	38.3411	9125	333	9076	60	45	75.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.8860	81.7168	99.8700	38.3320	733	164	768	1	1	100.0000
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	95.9239	95.6260	96.2236	38.3297	3498	160	5784	227	218	96.0352
ltrigg-rtg1	INDEL	I16_PLUS	HG002compoundhet	hetalt	85.8044	75.3942	99.5501	38.3274	1578	515	1549	7	7	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.4317	89.6700	99.7275	38.3193	625	72	732	2	2	100.0000
gduggal-snapvard	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	70.9708	71.4018	70.5450	38.3153	17522	7018	22276	9301	8410	90.4204
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	31.0023	26.7606	36.8421	38.3117	19	52	35	60	46	76.6667
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.5426	99.4455	97.6559	38.3006	4663	26	4666	112	1	0.8929
gduggal-bwafb	INDEL	I16_PLUS	*	*	66.2146	51.1369	93.9014	38.2990	3261	3116	3372	219	218	99.5434
eyeh-varpipe	INDEL	D6_15	func_cds	het	89.6552	89.6552	89.6552	38.2979	26	3	26	3	3	100.0000
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	73.3614	64.8603	84.4271	38.2979	766	415	759	140	137	97.8571
qzeng-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.2635	98.1273	98.4000	38.2934	262	5	861	14	8	57.1429
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	72.8440	62.9842	86.3636	38.2927	439	258	437	69	65	94.2029
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	91.1545	88.4965	93.9771	38.2912	8370	1088	8301	532	447	84.0226
gduggal-snapfb	INDEL	*	func_cds	*	91.5789	87.8652	95.6204	38.2883	391	54	393	18	12	66.6667
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.0405	84.0481	99.3020	38.2843	3214	610	3272	23	23	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	92.3787	95.5903	89.3758	38.2787	672	31	673	80	79	98.7500
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.4520	96.9512	100.0000	38.2784	318	10	337	0	0
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	74.4023	70.1058	79.2599	38.2733	14439	6157	14671	3839	3773	98.2808
anovak-vg	SNP	*	HG002compoundhet	homalt	80.7165	80.5695	80.8640	38.2684	8687	2095	7974	1887	1143	60.5723
hfeng-pmm3	SNP	ti	HG002compoundhet	het	96.8798	94.0768	99.8549	38.2659	8942	563	8944	13	3	23.0769
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.9721	86.8671	100.0000	38.2637	549	83	576	0	0
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	41.1142	35.4136	49.0020	38.2625	976	1780	982	1022	950	92.9550
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.1147	86.7089	98.2394	38.2609	548	84	558	10	9	90.0000
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.9532	99.9532	99.9531	38.2523	2137	1	2133	1	1	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.3156	84.0190	100.0000	38.2483	531	101	557	0	0
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7709	99.7712	99.7706	38.2436	1308	3	1305	3	2	66.6667
ndellapenna-hhga	INDEL	I6_15	func_cds	*	98.8235	97.6744	100.0000	38.2353	42	1	42	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	38.2353	21	0	21	0	0

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