PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
62051-62100 / 86044 show all
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
54.5918
37.8497
97.8929
39.6624
2584424328346158
95.0820
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.9920
92.6052
99.6360
39.6618
546043654752020
100.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.9920
92.6052
99.6360
39.6618
546043654752020
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.8665
99.8517
99.8813
39.6598
673410673282
25.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.8687
99.8426
99.8949
39.6597
114151811408123
25.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.8719
99.8294
99.9145
39.6596
46818467641
25.0000
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.6384
95.7207
99.6345
39.6588
12755751801917
89.4737
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2779
98.6498
99.9141
39.6579
233832232622
100.0000
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9093
97.5848
98.2359
39.6520
1781844117820320305
95.3125
hfeng-pmm3SNP*HG002compoundhet*
97.8284
95.8679
99.8709
39.6499
247551067247553215
46.8750
gduggal-snapfbINDELI6_15*homalt
78.8948
72.1430
87.0410
39.6459
450117384480667645
96.7016
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
66.7240
96.5130
50.9868
39.6443
9189332129431244212249
98.4488
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
45.5773
40.9756
51.3433
39.6396
84121172163161
98.7730
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
45.5773
40.9756
51.3433
39.6396
84121172163161
98.7730
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1287
94.5229
99.8822
39.6374
167497169622
100.0000
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.8636
98.0031
99.7394
39.6351
191439191454
80.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.5825
99.2217
99.9459
39.6327
739458739141
25.0000
ltrigg-rtg2INDELD16_PLUS*hetalt
95.7476
92.6539
99.0550
39.6309
179114217821717
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.8905
99.9061
97.8953
39.6283
7445774421603
1.8750
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
31.2083
26.2195
38.5417
39.6226
431217411898
83.0508
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
51.7221
46.8234
57.7656
39.6200
1774720155247261807814175
78.4102
raldana-dualsentieonSNP*HG002compoundhet*
97.7792
95.7401
99.9071
39.6169
247221100247222315
65.2174
ghariani-varprowlINDELD6_15HG002compoundhet*
10.6907
9.2349
12.6916
39.6150
834819782856965632
98.8764
jmaeng-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6967
99.7400
99.6534
39.6128
4604124600162
12.5000
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.5386
99.2998
99.7786
39.6095
226916225351
20.0000
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
95.1482
96.8620
93.4939
39.6090
10032325149021037946
91.2247
bgallagher-sentieonSNPtiHG002compoundhethet
99.8158
99.7685
99.8631
39.5979
9483229481136
46.1538
jli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.1609
99.8464
98.4848
39.5973
1950319503030
100.0000
jlack-gatkSNPtiHG002complexvarhetalt
98.7893
98.5507
99.0291
39.5894
204320422
100.0000
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6636
99.5017
99.8260
39.5847
459323458983
37.5000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.7965
99.5102
98.0929
39.5838
1137756114192226
2.7027
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.2492
99.3985
99.1004
39.5833
1322813221210
83.3333
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
87.2842
83.8309
91.0342
39.5768
24994826681658602
91.4894
jlack-gatkSNP*HG002complexvarhetalt
99.0323
99.0323
99.0323
39.5712
307330733
100.0000
jlack-gatkSNPtvHG002complexvarhetalt
99.0323
99.0323
99.0323
39.5712
307330733
100.0000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.3995
94.9309
100.0000
39.5543
2061121700
ndellapenna-hhgaSNP*HG002compoundhet*
98.3720
97.8158
98.9346
39.5539
2525856425258272233
85.6618
jli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.3074
94.9664
99.7667
39.5535
2547135256666
100.0000
hfeng-pmm2SNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
39.5280
205220500
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
84.8287
79.2124
91.3021
39.5276
3681966175316781
48.5030
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.7426
92.6463
99.0529
39.5216
178914217781717
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.7426
92.6463
99.0529
39.5216
178914217781717
100.0000
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.2655
94.7083
99.9646
39.5202
5584312564522
100.0000
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.2655
94.7083
99.9646
39.5202
5584312564522
100.0000
ckim-gatkSNPtiHG002complexvarhetalt
97.5369
95.6522
99.4975
39.5137
198919811
100.0000
gduggal-bwafbSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.4445
99.7009
99.1894
39.5064
73332273426010
16.6667
anovak-vgINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
36.9586
26.4511
61.3160
39.5013
638177416961070978
91.4019
ciseli-customSNPti*hetalt
87.1087
81.2715
93.8492
39.4958
4731094733117
54.8387
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
94.9121
91.0588
99.1060
39.4900
7747677677
100.0000
gduggal-snapfbINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
88.1415
83.9662
92.7536
39.4737
199386455
100.0000