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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
62001-62050 / 86044 show all
dgrover-gatkSNPtiHG002compoundhethet
99.7790
99.7685
99.7895
39.8442
94832294812014
70.0000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5170
99.7054
99.3293
39.8437
47391447393232
100.0000
asubramanian-gatkINDEL*func_cdshomalt
99.3348
99.1150
99.5556
39.8396
224222411
100.0000
anovak-vgINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
50.7904
39.6185
70.7374
39.8375
540823513221231902
89.5902
anovak-vgSNP*tech_badpromoters*
89.4635
84.0764
95.5882
39.8230
1322513066
100.0000
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
92.0469
94.0521
90.1255
39.8201
9788619976610701036
96.8224
ciseli-customSNPtvHG002complexvarhetalt
70.4724
57.7419
90.4040
39.8176
179131179199
47.3684
ciseli-customSNP*HG002complexvarhetalt
70.4724
57.7419
90.4040
39.8176
179131179199
47.3684
mlin-fermikitINDELI6_15*hetalt
71.1528
55.4789
99.1705
39.8078
4744380747824040
100.0000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.4343
99.0271
99.8449
39.8008
386838386363
50.0000
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
39.9604
56.2674
30.9816
39.7969
202157202450389
86.4444
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
63.1468
57.9627
69.3493
39.7938
404293405179173
96.6480
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.0202
97.6165
72.2212
39.7852
7208176769329592890
97.6681
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
49.2492
43.6456
56.5037
39.7780
41285330423132572430
74.6085
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
89.8810
81.7985
99.7358
39.7772
75516875522
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.8012
88.8400
99.3492
39.7743
504763450383325
75.7576
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
27.0890
20.6844
39.2387
39.7707
2721043268415363
87.4699
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50*
79.8081
77.9624
81.7434
39.7623
285288064487731089310778
98.9443
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
97.9793
99.8507
96.1768
39.7598
4682746791861
0.5376
egarrison-hhgaSNP*HG002compoundhet*
98.8848
98.3812
99.3937
39.7483
2540441825408155114
73.5484
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
86.6457
91.9827
81.8942
39.7431
6792592676214951459
97.5920
ckim-vqsrSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7534
99.6812
99.8257
39.7409
343911343662
33.3333
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50*
63.5093
59.8218
67.6813
39.7409
2189014702302171442911301
78.3214
eyeh-varpipeSNPtiHG002compoundhet*
97.7572
99.1589
96.3946
39.7398
1733114712860481101
20.9979
ckim-dragenINDELI1_5func_cds*
98.6301
100.0000
97.2973
39.7394
180018050
0.0000
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.2725
91.6923
99.1437
39.7362
89481104299
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.2725
91.6923
99.1437
39.7362
89481104299
100.0000
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.0800
95.1730
94.9873
39.7320
48702474870257123
47.8599
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.7859
99.8680
99.7039
39.7224
181592418186546
11.1111
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.3995
94.9309
100.0000
39.7222
2061121700
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4688
94.0129
99.0564
39.7188
554335355645346
86.7925
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4688
94.0129
99.0564
39.7188
554335355645346
86.7925
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.6667
93.5484
100.0000
39.7183
2031421400
gduggal-bwaplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
84.4268
73.3771
99.3944
39.7122
2792101327901715
88.2353
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
52.6084
47.9255
58.3056
39.7096
566615702502328
65.3386
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1845
96.8509
99.5553
39.7095
17684575176857967
84.8101
jli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5868
99.9441
99.2321
39.7088
10726610726831
1.2048
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.5851
99.5485
99.6217
39.7050
3969183950156
40.0000
ckim-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7825
99.7971
99.7680
39.6992
34437344082
25.0000
ciseli-customSNPtv*hetalt
87.9067
82.2044
94.4591
39.6977
7161557164219
45.2381
ciseli-customSNP**hetalt
87.9067
82.2044
94.4591
39.6977
7161557164219
45.2381
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8863
99.7728
100.0000
39.6930
21965220000
jpowers-varprowlSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
98.8278
100.0000
97.6827
39.6904
2738027406542
64.6154
ghariani-varprowlINDELI1_5*homalt
94.4302
91.5834
97.4597
39.6857
553425086552841441928
64.3997
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.1579
94.9718
95.3448
39.6821
38722053871189179
94.7090
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.1348
99.8900
98.3909
39.6771
1816320181602974
1.3468
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.0480
87.7443
94.6101
39.6686
12973181212884734647
88.1471
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.2343
99.5392
98.9313
39.6684
1944919442120
95.2381
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.3638
94.8948
99.9647
39.6673
5595301565622
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.3638
94.8948
99.9647
39.6673
5595301565622
100.0000