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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
61851-61900 / 86044 show all
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
91.8860
90.8028
92.9954
40.2854
2228322572311417411173
67.3751
hfeng-pmm2INDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.4200
93.0876
100.0000
40.2817
2021521200
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
64.0613
59.9713
68.7500
40.2750
418279418190185
97.3684
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
98.4293
97.9167
98.9474
40.2516
188418820
0.0000
ckim-vqsrINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.7096
93.7179
99.8985
40.2466
2924196295333
100.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8635
99.7274
100.0000
40.2446
21956219900
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.7059
93.6606
99.9559
40.2439
1564610591586976
85.7143
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.7059
93.6606
99.9559
40.2439
1564610591586976
85.7143
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
96.4108
95.2812
97.5675
40.2387
23382115824186603555
92.0398
ckim-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.7267
93.7500
99.8985
40.2385
2925195295433
100.0000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
17.5930
11.9082
33.6634
40.2367
83614102201155
77.1144
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6500
99.6294
99.6706
40.2309
67202566562211
50.0000
ltrigg-rtg2INDELD6_15*hetalt
97.5461
95.7915
99.3661
40.2288
783034478385050
100.0000
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50het
88.9790
96.7259
82.3810
40.2277
20687020764444
0.9009
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
40.2266
211021100
egarrison-hhgaINDELI16_PLUSHG002compoundhethetalt
90.3511
82.9909
99.1438
40.2252
173735617371511
73.3333
hfeng-pmm3INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.6249
86.3494
99.8841
40.2114
3302522344744
100.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.2222
94.5946
100.0000
40.2102
4552645500
anovak-vgSNPtiHG002compoundhethet
76.5771
76.2336
76.9238
40.2064
72462259824724742044
82.6192
ckim-dragenSNPtiHG002compoundhethet
99.7319
99.7265
99.7373
40.1998
9479269491255
20.0000
ltrigg-rtg1INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.4727
88.3644
99.2078
40.1968
161021216281312
92.3077
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4289
93.4391
99.6164
40.1880
156091096158436161
100.0000
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4289
93.4391
99.6164
40.1880
156091096158436161
100.0000
dgrover-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.0819
89.2259
99.4969
40.1872
341241235601817
94.4444
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.4573
99.8975
99.0210
40.1856
1072111107211061
0.9434
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9317
99.8636
100.0000
40.1819
14642144700
jlack-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.3650
99.8551
98.8796
40.1582
344553442392
5.1282
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.0953
99.8075
98.3931
40.1515
18148351818629710
3.3670
ndellapenna-hhgaINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
73.1041
58.3425
97.8659
40.1460
10637599632116
76.1905
bgallagher-sentieonINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
96.5585
93.4500
99.8809
40.1426
1655116167722
100.0000
cchapple-customSNP*HG002compoundhet*
99.2099
98.9002
99.5216
40.1325
255382842662812897
75.7812
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
94.3163
93.0341
95.6344
40.1307
37932844206192187
97.3958
ciseli-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
32.1213
27.4648
38.6792
40.1130
39103416565
100.0000
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.8058
93.8094
100.0000
40.1072
5531365558800
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.8058
93.8094
100.0000
40.1072
5531365558800
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
51.6425
35.4076
95.3714
40.1032
89916408864333
76.7442
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
78.1416
74.7118
81.9014
40.1032
304610313041672667
99.2560
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
77.7226
63.9247
99.1164
40.0903
3769212738143434
100.0000
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
77.7226
63.9247
99.1164
40.0903
3769212738143434
100.0000
ciseli-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
83.5759
89.6241
78.2925
40.0872
11921381183328283
86.2805
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.6736
97.5987
99.7724
40.0818
308976306877
100.0000
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.2106
99.7440
98.6829
40.0729
1948519482625
96.1538
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7439
99.5818
99.9065
40.0728
21439213821
50.0000
astatham-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.9775
89.0167
99.5238
40.0705
340442035531717
100.0000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.0496
99.4927
98.6105
40.0631
1137558114261612
1.2422
ckim-dragenINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.8661
87.0293
99.5422
40.0515
332849634791616
100.0000
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
79.5911
66.1007
100.0000
40.0484
1090559123800
anovak-vgSNPtvlowcmp_SimpleRepeat_triTR_11to50*
97.2061
97.3623
97.0504
40.0412
335991338910349
47.5728
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
68.9415
78.6340
61.3762
40.0333
4491221106696623
89.5115
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.5556
99.1696
99.9446
40.0259
1803215118029102
20.0000