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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
61651-61700 / 86044 show all
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
95.0134
91.7620
98.5037
40.9426
4013639566
100.0000
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.9479
94.1155
99.9561
40.9419
157229831594476
85.7143
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9479
94.1155
99.9561
40.9419
157229831594476
85.7143
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1601
96.8618
99.4937
40.9343
17686573176879086
95.5556
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
78.6704
65.5385
98.3834
40.9277
42622442677
100.0000
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
72.5735
57.3752
98.7253
40.9262
1517112715492020
100.0000
eyeh-varpipeINDELI6_15*het
83.0781
80.3150
86.0381
40.9246
80581975804813061290
98.7749
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.0969
99.5403
98.6573
40.9208
6713316760921
1.0870
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
53.0600
50.0000
56.5189
40.9091
865865867667662
99.2504
anovak-vgINDELI1_5tech_badpromotershomalt
72.8745
69.2308
76.9231
40.9091
941032
66.6667
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2974
99.4333
99.1620
40.9075
50882950884342
97.6744
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
96.7237
99.6377
93.9753
40.8977
742527706645322
4.8565
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
97.4606
99.4792
95.5224
40.8824
191119297
77.7778
ltrigg-rtg2INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.3080
97.2255
99.4149
40.8780
662318966273939
100.0000
gduggal-bwafbINDELD6_15HG002compoundhethetalt
91.1254
84.6645
98.6540
40.8708
6901125012461717
100.0000
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
77.6408
64.0764
98.4903
40.8685
6712376362639686
89.5833
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.2777
94.8052
99.8826
40.8681
167992170122
100.0000
qzeng-customSNPtiHG002compoundhet*
98.4045
98.1577
98.6526
40.8633
171563221771924286
35.5372
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
96.7002
99.5423
94.0159
40.8529
1305613048322
26.5060
raldana-dualsentieonSNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
40.8451
4104111
100.0000
qzeng-customSNPtvfunc_cdshet
99.5488
99.6613
99.4365
40.8444
264892647150
0.0000
cchapple-customINDEL*func_cds*
98.9926
98.8764
99.1091
40.8432
440544542
50.0000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
80.7503
68.3682
98.6094
40.8377
817378780119
81.8182
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
86.8622
82.8909
91.2332
40.8368
3154651156115079
52.6667
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
73.4050
58.5620
98.3268
40.8270
10677559991715
88.2353
ckim-isaacINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
76.6987
63.3222
97.2403
40.8261
5683295991714
82.3529
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.2138
99.9488
96.5381
40.8253
1952119527069
98.5714
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
82.7813
80.4513
85.2502
40.8125
32807973254563503
89.3428
jli-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
40.8100
13300133000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.1310
94.7620
99.6215
40.8094
15830875160566159
96.7213
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.1310
94.7620
99.6215
40.8094
15830875160566159
96.7213
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
77.4016
63.6945
98.6259
40.8078
6672380363168882
93.1818
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
87.8092
82.7619
93.5122
40.8038
8691813416237233
98.3122
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
88.3910
79.2549
99.9079
40.8013
2170568217021
50.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
60.4255
44.0994
95.9459
40.8000
71907133
100.0000
anovak-vgINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
50.6371
40.3001
68.1066
40.7912
23103422674831602890
91.4557
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
81.7362
74.1234
91.0918
40.7803
439715354397430427
99.3023
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
68.4444
95.6522
53.2872
40.7787
1547154135135
100.0000
jmaeng-gatkSNPtiHG002compoundhethet
99.3342
98.8953
99.7771
40.7782
940010594002117
80.9524
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
89.3587
81.9106
98.2968
40.7781
4038940476
85.7143
gduggal-bwavardINDEL**homalt
93.4187
87.7664
99.8491
40.7725
1098591531310921416592
55.7576
jmaeng-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.4342
93.1731
99.9319
40.7661
2907213293621
50.0000
ndellapenna-hhgaINDELD16_PLUSHG002compoundhet*
63.8133
53.4814
79.0931
40.7537
125210891343355284
80.0000
gduggal-bwafbSNPtiHG002compoundhet*
98.0359
99.0731
97.0203
40.7433
1731616217387534136
25.4682
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
84.3152
93.7856
76.5821
40.7415
21431422142655651
99.3893
rpoplin-dv42INDELD1_5func_cds*
100.0000
100.0000
100.0000
40.7407
159016000
ckim-dragenINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
ckim-gatkINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
bgallagher-sentieonINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
bgallagher-sentieonINDELD1_5func_cds*
100.0000
100.0000
100.0000
40.7407
159016000