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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1222 1223 1224 1225 1226 1227 1228 1229 1230 ... 1720 1721 » 61251-61300 / 86044 show all
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.3604	98.8187	99.9081	42.3617	2175	26	2175	2	2	100.0000
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8183	99.8183	99.8183	42.3560	2197	4	2198	4	3	75.0000
gduggal-snapfb	INDEL	I6_15	HG002complexvar	homalt	74.1849	64.7446	86.8481	42.3529	786	428	766	116	108	93.1034
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.2475	93.6213	99.0253	42.3352	6913	471	12598	124	72	58.0645
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.3465	85.0256	98.6826	42.3343	829	146	824	11	11	100.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5812	99.7018	99.4609	42.3318	10700	32	10700	58	2	3.4483
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.9969	94.8995	99.1890	42.3293	1228	66	1223	10	10	100.0000
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	81.0877	69.6203	97.0779	42.3221	440	192	299	9	9	100.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6905	99.8338	99.5476	42.3216	11414	19	11441	52	4	7.6923
ghariani-varprowl	INDEL	I1_5	HG002complexvar	homalt	95.8338	95.7466	95.9213	42.3182	12876	572	12817	545	363	66.6055
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.0392	94.3279	99.9110	42.3116	3326	200	3366	3	3	100.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.0392	94.3279	99.9110	42.3116	3326	200	3366	3	3	100.0000
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	62.2829	56.8163	68.9135	42.3099	671	510	685	309	288	93.2039
jmaeng-gatk	INDEL	I6_15	func_cds	homalt	100.0000	100.0000	100.0000	42.3077	15	0	15	0	0
hfeng-pmm2	INDEL	I1_5	func_cds	het	98.3192	98.3051	98.3333	42.3077	58	1	59	1	0	0.0000
hfeng-pmm2	INDEL	I6_15	func_cds	homalt	100.0000	100.0000	100.0000	42.3077	15	0	15	0	0
anovak-vg	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	40.0000	50.0000	33.3333	42.3077	4	4	5	10	7	70.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	13.3942	7.1895	97.7778	42.3077	11	142	44	1	1	100.0000
raldana-dualsentieon	INDEL	I6_15	func_cds	homalt	100.0000	100.0000	100.0000	42.3077	15	0	15	0	0
qzeng-custom	SNP	*	HG002compoundhet	homalt	98.8868	98.8963	98.8772	42.3069	10663	119	8190	93	74	79.5699
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.3026	2199	2	2199	1	1	100.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3587	99.9407	98.7835	42.3002	6740	4	6740	83	1	1.2048
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.8372	97.7011	100.0000	42.2937	1105	26	1112	0	0
gduggal-snapvard	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	62.3368	46.0175	96.5915	42.2906	1687	1979	1757	62	55	88.7097
jlack-gatk	SNP	tv	HG002compoundhet	homalt	99.7638	99.8229	99.7048	42.2900	3382	6	3377	10	9	90.0000
egarrison-hhga	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.5832	87.5139	98.2759	42.2886	785	112	798	14	12	85.7143
gduggal-bwaplat	SNP	ti	HG002compoundhet	*	89.0817	91.8641	86.4629	42.2720	16056	1422	16121	2524	263	10.4200
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.1302	98.4848	99.7840	42.2693	455	7	462	1	1	100.0000
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2451	98.5461	99.9540	42.2689	2169	32	2172	1	1	100.0000
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	83.7908	73.3408	97.7136	42.2636	5216	1896	5214	122	120	98.3607
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7955	99.7728	99.8183	42.2613	2196	5	2197	4	3	75.0000
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	34.5477	35.3061	33.8212	42.2578	173	317	647	1266	1039	82.0695
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	77.7997	63.9808	99.2322	42.2569	10688	6017	10856	84	82	97.6190
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	77.7997	63.9808	99.2322	42.2569	10688	6017	10856	84	82	97.6190
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	69.1351	77.4877	62.4080	42.2541	2998	871	6702	4037	3716	92.0486
gduggal-snapfb	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	60.9231	51.0140	75.6098	42.2535	327	314	124	40	40	100.0000
jlack-gatk	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	42.2535	41	0	41	0	0
hfeng-pmm3	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	42.2535	41	0	41	0	0
hfeng-pmm1	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	42.2535	41	0	41	0	0
ltrigg-rtg2	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	42.2535	41	0	41	0	0
gduggal-bwavard	SNP	tv	func_cds	het	99.0001	98.7956	99.2054	42.2421	2625	32	2622	21	9	42.8571
jpowers-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	17.0940	41.6667	10.7527	42.2360	10	14	10	83	83	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	97.9592	96.0000	100.0000	42.2222	24	1	26	0	0
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	97.9592	96.0000	100.0000	42.2222	24	1	26	0	0
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7925	97.6137	100.0000	42.2217	2618	64	2637	0	0
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2864	98.6702	99.9102	42.2199	1113	15	1113	1	1	100.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6674	99.7924	99.5426	42.2165	6730	14	6747	31	2	6.4516
ghariani-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	62.9779	59.7881	66.5273	42.2033	14672	9868	14642	7367	7111	96.5250
ckim-isaac	INDEL	I16_PLUS	*	hetalt	65.0682	48.5224	98.7366	42.1910	1018	1080	1016	13	11	84.6154
asubramanian-gatk	SNP	tv	func_cds	het	99.4171	99.5107	99.3236	42.1899	2644	13	2643	18	0	0.0000

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