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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1221 1222 1223 1224 1225 1226 1227 1228 1229 ... 1720 1721 » 61201-61250 / 86044 show all
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.8372	97.7011	100.0000	42.5246	1105	26	1111	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	96.9441	95.7602	98.1576	42.5181	9057	401	9057	170	166	97.6471
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	84.8790	77.9848	93.1104	42.5160	921	260	919	68	68	100.0000
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	80.8243	69.1149	97.3105	42.5158	1882	841	796	22	22	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	98.9986	98.4353	99.5683	42.5145	692	11	692	3	2	66.6667
ltrigg-rtg1	SNP	*	HG002compoundhet	het	98.6093	97.5384	99.7040	42.5144	13829	349	13809	41	9	21.9512
gduggal-bwaplat	SNP	tv	func_cds	*	99.4027	98.9934	99.8155	42.5143	4327	44	4327	8	0	0.0000
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	42.1139	37.4782	48.0583	42.5126	7719	12877	7710	8333	8271	99.2560
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	23.1772	16.4208	39.3809	42.5111	345	1756	458	705	585	82.9787
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0126	98.2938	99.7419	42.5046	3111	54	3091	8	8	100.0000
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.6524	97.4079	99.9291	42.5020	1428	38	1410	1	0	0.0000
anovak-vg	INDEL	D1_5	func_cds	het	90.3955	94.1176	86.9565	42.5000	80	5	80	12	8	66.6667
ckim-isaac	INDEL	*	func_cds	het	97.8678	96.7290	99.0338	42.5000	207	7	205	2	1	50.0000
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	91.3043	84.0000	100.0000	42.5000	21	4	23	0	0
ndellapenna-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	*	89.6217	88.0000	91.3043	42.5000	22	3	21	2	0	0.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.6832	96.0089	99.4168	42.4933	19774	822	19775	116	110	94.8276
gduggal-snapvard	INDEL	I6_15	*	het	64.9859	82.1571	53.7516	42.4853	8242	1790	11591	9973	7974	79.9559
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.4847	1124	4	1124	1	1	100.0000
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7395	97.7629	99.7358	42.4788	2622	60	2643	7	7	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	98.9247	98.1508	99.7110	42.4771	690	13	690	2	1	50.0000
gduggal-snapfb	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	42.8116	28.1132	89.7196	42.4731	149	381	96	11	10	90.9091
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7237	99.8934	99.5546	42.4719	4684	5	4694	21	2	9.5238
ckim-isaac	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	92.2162	86.6135	98.5938	42.4667	3151	487	3155	45	26	57.7778
dgrover-gatk	SNP	ti	tech_badpromoters	homalt	98.7952	100.0000	97.6190	42.4658	41	0	41	1	1	100.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.7725	95.8037	99.8239	42.4645	4452	195	4535	8	8	100.0000
anovak-vg	INDEL	I16_PLUS	HG002complexvar	*	33.1975	24.5225	51.3699	42.4631	321	988	300	284	225	79.2254
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	98.7659	98.1114	99.4293	42.4615	4000	77	4007	23	16	69.5652
asubramanian-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.1590	93.4295	99.0528	42.4608	2915	205	3451	33	31	93.9394
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.8363	99.9532	99.7196	42.4576	2137	1	2134	6	2	33.3333
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	6.0167	3.3981	26.2295	42.4528	7	199	32	90	74	82.2222
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.4266	99.5114	95.4273	42.4504	5092	25	5092	244	244	100.0000
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	55.8126	45.6817	71.7174	42.4460	2888	3434	6598	2602	2576	99.0008
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	55.8126	45.6817	71.7174	42.4460	2888	3434	6598	2602	2576	99.0008
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	97.8546	96.4789	99.2701	42.4370	137	5	136	1	1	100.0000
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	78.8405	65.4387	99.1453	42.4354	977	516	928	8	7	87.5000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	55.8292	50.1922	62.8926	42.4297	6919	6866	6849	4041	3720	92.0564
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7919	97.6127	100.0000	42.4274	1104	27	1110	0	0
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	97.8791	98.9123	96.8672	42.4242	4638	51	4638	150	2	1.3333
egarrison-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.4927	96.2865	98.7296	42.4242	1089	42	1088	14	12	85.7143
eyeh-varpipe	INDEL	D1_5	tech_badpromoters	*	89.4737	89.4737	89.4737	42.4242	17	2	17	2	2	100.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.8130	100.0000	99.6267	42.4234	2138	0	2135	8	2	25.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	97.7777	96.0123	99.6093	42.4195	9992	415	9942	39	16	41.0256
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8224	99.6454	100.0000	42.4180	1124	4	1124	0	0
hfeng-pmm2	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.6667	84.6154	100.0000	42.4110	759	138	793	0	0
gduggal-snapplat	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	60.1656	43.9300	95.4373	42.4088	778	993	753	36	29	80.5556
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.4084	2199	2	2199	1	1	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	93.1784	90.6667	95.8333	42.4000	68	7	69	3	2	66.6667
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	77.5015	63.7949	98.7097	42.3792	622	353	153	2	2	100.0000
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	93.0487	95.9549	90.3133	42.3771	1874	79	1874	201	56	27.8607
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	96.7502	94.8052	98.7768	42.3619	365	20	969	12	7	58.3333

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