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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1219 1220 1221 1222 1223 1224 1225 1226 1227 ... 1720 1721 » 61101-61150 / 86044 show all
jlack-gatk	INDEL	I1_5	tech_badpromoters	het	100.0000	100.0000	100.0000	42.8571	8	0	8	0	0
hfeng-pmm3	INDEL	I1_5	tech_badpromoters	het	100.0000	100.0000	100.0000	42.8571	8	0	8	0	0
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	90.9091	83.3333	100.0000	42.8571	10	2	12	0	0
jlack-gatk	INDEL	D16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	42.8571	4	0	4	0	0
hfeng-pmm2	SNP	tv	tech_badpromoters	het	98.4615	96.9697	100.0000	42.8571	32	1	32	0	0
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	73.6158	59.0525	97.7135	42.8517	1608	1115	1453	34	29	85.2941
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	81.5800	75.0000	89.4256	42.8500	2067	689	2055	243	230	94.6502
asubramanian-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.7907	95.9438	99.7101	42.8335	615	26	688	2	1	50.0000
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	95.7239	96.8194	94.6529	42.8294	10076	331	16976	959	707	73.7226
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8976	99.7954	100.0000	42.8240	1463	3	1478	0	0
egarrison-hhga	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	63.4351	46.7851	98.4838	42.8226	3187	3625	2793	43	38	88.3721
gduggal-snapvard	INDEL	D1_5	func_cds	*	87.5742	91.8239	83.7004	42.8212	146	13	190	37	33	89.1892
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.7473	94.3151	97.2237	42.8173	17221	1038	17930	512	480	93.7500
rpoplin-dv42	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.6856	95.4758	100.0000	42.8172	612	29	613	0	0
jli-custom	SNP	ti	*	hetalt	99.7420	99.6564	99.8279	42.8150	580	2	580	1	1	100.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7925	97.6137	100.0000	42.7983	2618	64	2637	0	0
egarrison-hhga	INDEL	D6_15	*	hetalt	65.0139	48.4952	98.5994	42.7885	3964	4210	3520	50	43	86.0000
eyeh-varpipe	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	41.7793	36.0397	49.6933	42.7847	1416	2513	1458	1476	1368	92.6829
egarrison-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.4743	92.1659	99.0291	42.7778	200	17	204	2	2	100.0000
bgallagher-sentieon	SNP	tv	HG002compoundhet	homalt	99.8524	99.9115	99.7933	42.7775	3385	3	3380	7	6	85.7143
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.9719	93.8052	98.2411	42.7766	6481	428	6479	116	88	75.8621
hfeng-pmm2	SNP	*	HG002compoundhet	het	95.9129	92.2768	99.8474	42.7742	13083	1095	13083	20	3	15.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.9637	99.4792	98.4536	42.7729	191	1	191	3	2	66.6667
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.4819	100.0000	98.9691	42.7729	192	0	192	2	1	50.0000
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	93.4659	95.5595	91.4621	42.7719	11965	556	34730	3242	2192	67.6126
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0211	98.0611	100.0000	42.7615	2630	52	2649	0	0
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	42.9905	27.6680	96.3481	42.7526	490	1281	1583	60	60	100.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	88.2006	78.9671	99.8794	42.7486	841	224	828	1	1	100.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	96.7084	94.4652	99.0608	42.7483	3789	222	3797	36	12	33.3333
hfeng-pmm1	SNP	*	tech_badpromoters	het	98.6842	97.4026	100.0000	42.7481	75	2	75	0	0
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	93.5628	88.9960	98.6237	42.7471	3138	388	3153	44	40	90.9091
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	93.5628	88.9960	98.6237	42.7471	3138	388	3153	44	40	90.9091
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.6261	99.8129	99.4400	42.7465	2134	4	2131	12	2	16.6667
hfeng-pmm1	SNP	tv	HG002compoundhet	homalt	99.8229	99.7934	99.8523	42.7460	3381	7	3381	5	5	100.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.9101	98.0611	99.7739	42.7400	2630	52	2648	6	6	100.0000
astatham-gatk	SNP	tv	HG002compoundhet	homalt	99.8376	99.8524	99.8227	42.7314	3383	5	3378	6	5	83.3333
anovak-vg	SNP	tv	tech_badpromoters	*	89.6729	84.7222	95.2381	42.7273	61	11	60	3	3	100.0000
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	70.8955	66.9014	75.3968	42.7273	95	47	95	31	29	93.5484
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.7232	2199	2	2199	1	1	100.0000
cchapple-custom	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	93.5988	98.6711	89.0226	42.7218	594	8	592	73	71	97.2603
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	42.7189	1125	3	1125	0	0
hfeng-pmm1	INDEL	I1_5	func_cds	het	99.1453	98.3051	100.0000	42.7184	58	1	59	0	0
jpowers-varprowl	SNP	ti	HG002compoundhet	*	92.4932	93.2258	91.7721	42.7151	16294	1184	16396	1470	904	61.4966
gduggal-bwafb	INDEL	I16_PLUS	HG002compoundhet	hetalt	60.2626	43.8127	96.4912	42.7136	917	1176	220	8	8	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.2727	83.9465	100.0000	42.7114	753	144	786	0	0
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	95.7955	92.0590	99.8481	42.7080	3246	280	3287	5	4	80.0000
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	95.7955	92.0590	99.8481	42.7080	3246	280	3287	5	4	80.0000
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	80.7660	81.6777	79.8745	42.7070	3330	747	3310	834	461	55.2758
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7221	99.9521	99.4931	42.7028	6265	3	6281	32	9	28.1250
raldana-dualsentieon	SNP	tv	HG002compoundhet	homalt	99.8228	99.7344	99.9113	42.6999	3379	9	3380	3	2	66.6667

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