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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
60501-60550 / 86044 show all
jmaeng-gatkINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.8210
86.6038
100.0000
44.7917
4597147700
qzeng-customINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
92.5975
97.2222
88.3929
44.7887
21066939141
45.0549
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2893
95.0573
97.5536
44.7868
19578101819579491468
95.3157
gduggal-snapplatSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
97.2935
94.7297
100.0000
44.7856
2085116208600
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.9905
98.3405
99.6492
44.7855
936315893753331
93.9394
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
57.8606
40.8740
99.0058
44.7850
1113161011951211
91.6667
ckim-gatkINDELI16_PLUSHG002compoundhethetalt
95.8494
92.1166
99.8975
44.7808
1928165195022
100.0000
gduggal-bwavardINDELD6_15HG002complexvarhomalt
86.1695
76.9889
97.8360
44.7799
9002698591914
73.6842
gduggal-bwaplatSNPtitech_badpromotershomalt
94.8718
90.2439
100.0000
44.7761
3743700
gduggal-snapplatSNPtitech_badpromotershomalt
94.8718
90.2439
100.0000
44.7761
3743700
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
44.7761
481048100
bgallagher-sentieonINDEL*func_cds*
99.5531
99.7753
99.3318
44.7724
444144631
33.3333
cchapple-customSNP*HG002compoundhethet
98.9809
98.7163
99.2469
44.7646
139961821620912392
74.7967
ghariani-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.4008
99.8073
97.0334
44.7618
6732136738206131
63.5922
ghariani-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50*
98.6463
99.5904
97.7199
44.7612
3890163900919
9.8901
ckim-isaacINDELI16_PLUSHG002compoundhet*
61.2497
48.1568
84.1205
44.7593
103211111033195178
91.2821
cchapple-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.9285
91.4672
96.5260
44.7581
879823362121110
90.9091
egarrison-hhgaSNP*tech_badpromotershet
98.7179
100.0000
97.4684
44.7552
7707720
0.0000
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
54.3999
51.2849
57.9178
44.7526
1943818464330232399420921
87.1926
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
70.3098
64.7887
76.8595
44.7489
9250932826
92.8571
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.3508
99.8517
98.8550
44.7482
6734106734781
1.2821
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.6206
94.3419
99.0120
44.7425
230113823052310
43.4783
ciseli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
98.1931
99.5911
96.8338
44.7388
2192922027234
47.2222
raldana-dualsentieonSNPtitech_badpromotershet
97.6744
95.4545
100.0000
44.7368
4224200
ghariani-varprowlSNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
44.7368
4104111
100.0000
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
91.1548
86.0724
96.8750
44.7323
309503101010
100.0000
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
67.2694
51.8106
95.8763
44.7293
18617318687
87.5000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8153
99.7048
99.9260
44.7261
405312405332
66.6667
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
43.4297
28.6501
89.7059
44.7154
1042596177
100.0000
jli-customINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
88.7128
96.9359
81.7757
44.7028
348113507877
98.7179
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.0716
98.5896
99.5583
44.7023
3635523606168
50.0000
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
87.2844
97.5309
78.9862
44.6999
72681847277193672
3.7190
jli-customINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.1556
98.3254
100.0000
44.6980
411741200
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
88.4879
79.8982
99.1469
44.6823
13347335832542824
85.7143
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
88.4879
79.8982
99.1469
44.6823
13347335832542824
85.7143
gduggal-bwavardSNPtitech_badpromoters*
94.4785
90.5882
98.7179
44.6809
7787711
100.0000
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8976
99.7954
100.0000
44.6809
14633148200
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_triTR_11to50*
89.7154
88.6381
90.8193
44.6755
596876599321004991
98.7052
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
90.9582
83.4711
99.9208
44.6727
8081601009288
100.0000
cchapple-customINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
79.6460
66.5049
99.2593
44.6721
1376913411
100.0000
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
22.4034
18.2049
29.1188
44.6643
215966228555520
93.6937
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.0571
98.8804
97.2473
44.6639
11305128113053203
0.9375
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_triTR_11to50*
97.3102
95.9453
98.7144
44.6603
646027368348978
87.6404
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0139
98.4069
99.6285
44.6543
10192165101913837
97.3684
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_triTR_11to50het
96.9324
95.1886
98.7412
44.6522
348217644715746
80.7018
ckim-vqsrSNPtvfunc_cdshet
99.7366
99.7742
99.6990
44.6481
26516265080
0.0000
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
82.5695
96.6091
72.0927
44.6474
45301594544175924
1.3644
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
50.2642
88.4376
35.1094
44.6429
2417316243845064477
99.3564
jli-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.6931
99.5186
99.8683
44.6416
227411227530
0.0000
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.2985
98.8415
99.7597
44.6403
6655786641166
37.5000