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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59851-59900 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 30.1806 | 24.9718 | 38.1353 | 46.7618 | 663 | 1992 | 953 | 1546 | 1250 | 80.8538 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.4990 | 98.1160 | 98.8851 | 46.7540 | 17915 | 344 | 17916 | 202 | 197 | 97.5248 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 76.5465 | 76.6078 | 76.4854 | 46.7535 | 5158 | 1575 | 5162 | 1587 | 1041 | 65.5955 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | * | 87.9743 | 83.7209 | 92.6829 | 46.7532 | 36 | 7 | 38 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.9455 | 96.8900 | 99.0244 | 46.7532 | 405 | 13 | 406 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.9656 | 63.1429 | 98.5366 | 46.7532 | 221 | 129 | 202 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7607 | 99.5225 | 100.0000 | 46.7518 | 1459 | 7 | 1459 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.4108 | 97.4761 | 99.3635 | 46.7420 | 1429 | 37 | 1405 | 9 | 5 | 55.5556 | |
| gduggal-bwavard | INDEL | I16_PLUS | HG002complexvar | homalt | 81.9370 | 72.8155 | 93.6709 | 46.7416 | 225 | 84 | 222 | 15 | 7 | 46.6667 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.7133 | 96.8750 | 78.4810 | 46.7416 | 186 | 6 | 186 | 51 | 50 | 98.0392 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.7173 | 62.8571 | 98.4190 | 46.7368 | 220 | 130 | 249 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | HG002complexvar | het | 83.9009 | 81.8684 | 86.0369 | 46.7354 | 1928 | 427 | 1867 | 303 | 298 | 98.3498 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4783 | 99.1237 | 99.8355 | 46.7341 | 6674 | 59 | 6676 | 11 | 5 | 45.4545 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 98.6787 | 97.6320 | 99.7480 | 46.7338 | 4659 | 113 | 4750 | 12 | 12 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7862 | 99.5733 | 100.0000 | 46.7275 | 700 | 3 | 700 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.2079 | 85.6274 | 80.9215 | 46.7151 | 1126 | 189 | 1247 | 294 | 107 | 36.3946 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7593 | 99.7812 | 99.7374 | 46.7118 | 2280 | 5 | 2279 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.9237 | 90.0875 | 98.1013 | 46.7116 | 309 | 34 | 310 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D1_5 | HG002complexvar | het | 98.4401 | 97.6258 | 99.2681 | 46.7116 | 20272 | 493 | 18853 | 139 | 98 | 70.5036 | |
| jli-custom | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.7105 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.7105 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 72.9780 | 57.9977 | 98.3917 | 46.7104 | 2045 | 1481 | 2080 | 34 | 34 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 72.9780 | 57.9977 | 98.3917 | 46.7104 | 2045 | 1481 | 2080 | 34 | 34 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.2605 | 87.6033 | 99.6988 | 46.7095 | 318 | 45 | 331 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 46.7081 | 858 | 0 | 858 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | * | het | 91.9882 | 92.1325 | 91.8444 | 46.7075 | 10680 | 912 | 10079 | 895 | 860 | 96.0894 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.2809 | 97.0252 | 93.5982 | 46.7059 | 424 | 13 | 424 | 29 | 29 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.1948 | 95.7925 | 94.6045 | 46.7027 | 8014 | 352 | 8013 | 457 | 181 | 39.6061 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | het | 77.8675 | 83.4568 | 72.9798 | 46.7026 | 338 | 67 | 578 | 214 | 199 | 92.9907 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7214 | 99.8141 | 99.6289 | 46.6996 | 2148 | 4 | 2148 | 8 | 7 | 87.5000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 93.3148 | 88.6243 | 46.6855 | 335 | 24 | 335 | 43 | 41 | 95.3488 | |
| anovak-vg | INDEL | D16_PLUS | HG002compoundhet | homalt | 22.5256 | 75.0000 | 13.2530 | 46.6809 | 6 | 2 | 33 | 216 | 158 | 73.1481 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.5066 | 94.4770 | 98.6254 | 46.6789 | 1129 | 66 | 1148 | 16 | 15 | 93.7500 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.1691 | 88.9807 | 100.0000 | 46.6772 | 323 | 40 | 337 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | homalt | 71.4286 | 83.3333 | 62.5000 | 46.6667 | 5 | 1 | 5 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 46.6667 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 46.6667 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | tech_badpromoters | homalt | 93.1507 | 87.1795 | 100.0000 | 46.6667 | 34 | 5 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 46.6667 | 8 | 1 | 8 | 0 | 0 | ||