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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
59201-59250 / 86044 show all
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.9050
97.9929
99.8342
48.4986
361374361363
50.0000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
91.7626
87.4564
96.5147
48.4959
5013719504018291
50.0000
rpoplin-dv42SNPtvHG002compoundhet*
99.6523
99.5965
99.7081
48.4905
88873688802619
73.0769
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
81.2239
97.0100
69.8565
48.4904
58418584252251
99.6032
ckim-isaacSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
95.1611
91.0564
99.6533
48.4903
31463093162115
45.4545
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.2328
95.1446
99.4146
48.4901
92147112096666
100.0000
qzeng-customINDELD6_15tech_badpromoters*
100.0000
100.0000
100.0000
48.4848
1701700
ltrigg-rtg1INDELD6_15tech_badpromoters*
100.0000
100.0000
100.0000
48.4848
1701700
hfeng-pmm1INDELD6_15HG002complexvarhetalt
97.6862
95.6565
99.8039
48.4848
96944101821
50.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3078
99.3917
99.2240
48.4791
2941182941232
8.6957
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4249
99.3241
99.5259
48.4732
2939202939142
14.2857
gduggal-snapfbSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.2893
99.6556
98.9258
48.4715
4051144052445
11.3636
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.6770
98.5789
98.7753
48.4673
39545739524932
65.3061
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.6434
99.5326
99.7544
48.4618
4046194061101
10.0000
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
90.5529
87.3239
94.0299
48.4615
6296344
100.0000
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.2789
94.7020
100.0000
48.4536
143815000
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
82.6052
70.6331
99.4641
48.4530
92638592854
80.0000
ndellapenna-hhgaINDELI6_15**
96.5902
95.4921
97.7138
48.4477
23704111923721555427
76.9369
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7642
99.5294
100.0000
48.4461
846484600
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
68.0484
51.8421
98.9950
48.4456
19718319722
100.0000
ltrigg-rtg1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0164
98.0519
100.0000
48.4429
453944700
bgallagher-sentieonINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.9283
94.0397
100.0000
48.4429
142914900
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8177
96.1933
99.4980
48.4397
214038472140410889
82.4074
ckim-isaacINDEL*tech_badpromotershet
94.5946
89.7436
100.0000
48.4375
3543300
mlin-fermikitINDELD6_15HG002complexvarhetalt
87.9228
79.5656
98.2415
48.4281
8062078381515
100.0000
asubramanian-gatkINDELD6_15HG002complexvarhetalt
93.8487
92.3001
95.4501
48.4274
935789864745
95.7447
ltrigg-rtg1INDELI16_PLUS**
90.7186
84.0050
98.5984
48.4241
5357102052767566
88.0000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7636
100.0000
99.5283
48.4185
211021110
0.0000
ckim-isaacINDEL*tech_badpromoters*
92.9577
86.8421
100.0000
48.4127
66106500
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
98.2925
99.2749
97.3294
48.4124
465534466512817
13.2812
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
96.8631
95.1331
98.6572
48.4108
12516412491712
70.5882
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
92.1277
99.0847
86.0835
48.4103
43344337070
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
85.8009
91.8776
80.4781
48.4090
1150410171137827602725
98.7319
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.4485
99.8241
97.1103
48.4061
510895108152151
99.3421
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
84.3874
97.5345
74.3636
48.4035
8189207867629912903
97.0578
egarrison-hhgaSNP**hetalt
99.1394
99.1963
99.0826
48.4024
864786488
100.0000
egarrison-hhgaSNPtv*hetalt
99.1394
99.1963
99.0826
48.4024
864786488
100.0000
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
42.0233
85.0394
27.9070
48.4000
10819108279270
96.7742
rpoplin-dv42INDELI16_PLUSHG002compoundhet*
89.3838
84.2744
95.1528
48.3959
180633718069290
97.8261
anovak-vgSNPtimap_sirenhomalt
94.0329
89.3343
99.2531
48.3941
33872404433489252225
89.2857
ckim-dragenSNPti*hetalt
99.1507
99.8282
98.4823
48.3899
581158499
100.0000
ckim-isaacINDELD6_15tech_badpromoters*
96.9697
94.1176
100.0000
48.3871
1611600
hfeng-pmm3SNP*tech_badpromotershomalt
100.0000
100.0000
100.0000
48.3871
8008000
gduggal-snapvardSNPtvtech_badpromotershomalt
91.6667
84.6154
100.0000
48.3871
3363200
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
64.1239
47.4286
98.9583
48.3871
16618419021
50.0000
raldana-dualsentieonSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
48.3871
3213200
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
96.2631
94.2205
98.3962
48.3858
12397612272011
55.0000
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7054
99.5294
99.8819
48.3851
846484611
100.0000
raldana-dualsentieonSNPtimap_sirenhomalt
99.8878
99.8127
99.9630
48.3820
3784571378391414
100.0000
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.7958
97.9116
99.6962
48.3747
3610773610119
81.8182