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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
58401-58450 / 86044 show all
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
50.9329
44.5458
59.4580
50.1890
107413371097748692
92.5134
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
75.4333
60.8225
99.2832
50.1786
28118127721
50.0000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
75.5346
70.5119
81.3276
50.1751
51102137648114881088
73.1183
ghariani-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
98.7332
99.6556
97.8277
50.1744
4051144053900
0.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7501
99.8753
99.6251
50.1743
400653986151
6.6667
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.2803
99.4811
99.0803
50.1719
1035354103429688
91.6667
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
48.9009
46.9867
50.9776
50.1691
1503216960150181444214205
98.3590
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.1991
98.6599
99.7442
50.1650
6626906628177
41.1765
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
86.3636
76.0000
100.0000
50.1639
1524815200
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
90.7738
84.9582
97.4441
50.1592
3055430586
75.0000
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
90.0572
89.8904
90.2247
50.1569
3895443815990264904175
64.3297
rpoplin-dv42INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
93.8149
89.8021
98.2032
50.1554
267730426784947
95.9184
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
89.1967
80.5000
100.0000
50.1548
1613916100
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.5224
99.6844
91.6941
50.1544
4738154736429428
99.7669
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
76.4899
74.2821
78.8329
50.1539
88213054880823652266
95.8140
eyeh-varpipeSNP*lowcmp_SimpleRepeat_quadTR_11to50het
96.0585
99.7289
92.6487
50.1527
11402311088986445
5.2083
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
56.8616
54.1076
59.9109
50.1524
1114494521116874735485
73.3976
jli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9319
99.9727
99.8911
50.1493
36651366844
100.0000
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8540
99.7085
100.0000
50.1462
342134100
astatham-gatkSNP*map_sirenhomalt
99.7411
99.5377
99.9454
50.1425
54901255548923026
86.6667
hfeng-pmm1INDELI6_15**
97.8503
96.8134
98.9096
50.1395
2403279124037265246
92.8302
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
52.1766
96.2264
35.7920
50.1344
3723146371766686640
99.5801
anovak-vgINDEL**homalt
74.8405
92.1212
63.0190
50.1342
11531098621174346891364807
94.0418
mlin-fermikitINDELI6_15*het
88.6098
92.6243
84.9289
50.1273
9293740931516531640
99.2136
anovak-vgINDELD6_15HG002complexvarhet
77.7392
75.0641
80.6119
50.1246
23427782582621443
71.3366
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.6989
27.4371
43.6639
50.1227
16694414221928632250
78.5889
ghariani-varprowlINDELD1_5*homalt
93.4710
89.4248
97.9006
50.1151
43752517443695937631
67.3426
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3976
98.8024
100.0000
50.1134
132016132000
ckim-isaacINDELD1_5*homalt
97.8426
95.9899
99.7683
50.1114
4696419624693310936
33.0275
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.2169
98.7151
99.7238
50.1102
3611473611104
40.0000
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.9709
95.0352
98.9871
50.1046
283314828342924
82.7586
gduggal-bwaplatSNPtvHG002compoundhethomalt
94.3411
91.1747
97.7352
50.1035
308929930647167
94.3662
ltrigg-rtg2SNPtvmap_l100_m0_e0het
98.0155
96.4276
99.6566
50.1035
69642586965241
4.1667
ltrigg-rtg1SNP*map_siren*
99.4858
99.2395
99.7333
50.0979
145115111214510838849
12.6289
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.7414
97.6021
99.9075
50.0923
219854216120
0.0000
gduggal-bwavardSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
97.7441
95.6423
99.9404
50.0892
169077167711
100.0000
gduggal-bwavardINDELI6_15**
60.2022
55.3881
65.9327
50.0878
13749110741368570716805
96.2382
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.0062
95.1023
98.9878
50.0871
283514628362924
82.7586
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.4368
99.3178
99.5561
50.0867
1033671103174637
80.4348
bgallagher-sentieonSNP*map_sirenhomalt
99.8557
99.7643
99.9473
50.0857
55026130550172925
86.2069
ltrigg-rtg2INDELI16_PLUS*hetalt
90.2131
82.6025
99.3685
50.0717
173336517311111
100.0000
ckim-dragenINDEL*HG002compoundhethetalt
96.0007
92.5060
99.7699
50.0702
232931887234175454
100.0000
cchapple-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
98.7421
98.7469
98.7374
50.0631
394539155
100.0000
anovak-vgSNPtvHG002compoundhet*
74.6577
75.2101
74.1133
50.0629
67112212706324671646
66.7207
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
80.3731
72.7114
89.8397
50.0523
1166843791244114071388
98.6496
ltrigg-rtg2SNPtvHG002compoundhethet
99.1949
98.9300
99.4612
50.0484
4623504615255
20.0000
gduggal-bwavardSNP*lowcmp_SimpleRepeat_quadTR_11to50*
97.6816
97.8606
97.5032
50.0471
1779438917573450107
23.7778
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.0423
98.7194
99.3672
50.0468
4240554240272
7.4074
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.9550
96.3415
99.6234
50.0434
339712934391312
92.3077
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.9550
96.3415
99.6234
50.0434
339712934391312
92.3077