PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1163 1164 1165 1166 1167 1168 1169 1170 1171 ... 1720 1721 » 58301-58350 / 86044 show all
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	34.8996	38.9262	31.6279	50.4608	58	91	136	294	156	53.0612
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.8033	98.0989	99.5179	50.4556	5573	108	5573	27	24	88.8889
gduggal-bwaplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	87.6040	79.4025	97.6949	50.4555	3774	979	3772	89	75	84.2697
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7820	99.5649	100.0000	50.4551	1602	7	1633	0	0
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2546	99.1437	99.3657	50.4529	2663	23	2663	17	0	0.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	92.3676	91.1466	93.6218	50.4528	2512	244	2510	171	166	97.0760
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0301	99.8948	98.1803	50.4508	4748	5	4748	88	87	98.8636
ltrigg-rtg2	INDEL	D6_15	HG002complexvar	het	98.5457	97.9487	99.1499	50.4465	3056	64	2916	25	8	32.0000
gduggal-bwaplat	INDEL	D6_15	*	hetalt	82.8017	71.8008	97.7833	50.4460	5869	2305	5867	133	131	98.4962
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0407	99.9158	98.1807	50.4457	4749	4	4749	88	87	98.8636
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	60.2265	64.3636	56.5891	50.4418	531	294	730	560	480	85.7143
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	60.2265	64.3636	56.5891	50.4418	531	294	730	560	480	85.7143
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	98.8577	98.8657	98.8497	50.4413	2702	31	2664	31	15	48.3871
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	88.7788	99.0616	80.4299	50.4389	4645	44	4677	1138	26	2.2847
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	93.2204	87.9845	99.1189	50.4367	227	31	225	2	2	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8976	100.0000	99.7954	50.4360	2439	0	2439	5	0	0.0000
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5595	100.0000	99.1228	50.4348	343	0	339	3	2	66.6667
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	90.8187	92.0128	89.6552	50.4274	288	25	156	18	14	77.7778
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.2112	93.3565	99.2459	50.4272	6450	459	6449	49	44	89.7959
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2169	98.7151	99.7238	50.4244	3611	47	3611	10	3	30.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.2755	99.4715	99.0802	50.4204	10352	55	10341	96	89	92.7083
gduggal-snapfb	INDEL	I6_15	*	hetalt	66.8619	57.6892	79.5031	50.4107	4933	3618	1152	297	287	96.6330
hfeng-pmm1	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9703	99.9604	99.9802	50.4100	10098	4	10098	2	2	100.0000
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	96.7448	94.4798	99.1212	50.4094	3714	217	3722	33	3	9.0909
ciseli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	76.2936	79.9879	72.9255	50.4089	1323	331	1371	509	198	38.8998
dgrover-gatk	SNP	*	map_siren	homalt	99.8121	99.6791	99.9455	50.4067	54979	177	54970	30	26	86.6667
ltrigg-rtg1	SNP	tv	map_siren	het	99.1688	98.8255	99.5144	50.4058	28273	336	28278	138	6	4.3478
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	74.5996	62.5114	92.4837	50.4052	1369	821	283	23	22	95.6522
ckim-isaac	INDEL	I1_5	HG002complexvar	het	94.3344	93.1277	95.5727	50.4026	16939	1250	16838	780	423	54.2308
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	92.7491	96.2553	89.4894	50.3947	2699	105	2699	317	129	40.6940
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8762	99.8119	99.9405	50.3909	10083	19	10083	6	5	83.3333
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2959	98.6897	99.9096	50.3888	6628	88	6630	6	3	50.0000
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	49.4454	86.5913	34.6019	50.3848	2835	439	2855	5396	5373	99.5738
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3410	99.5071	99.1754	50.3830	5653	28	5653	47	47	100.0000
gduggal-bwavard	INDEL	I1_5	func_cds	het	91.9355	96.6102	87.6923	50.3817	57	2	57	8	6	75.0000
ciseli-custom	INDEL	*	tech_badpromoters	*	58.7413	55.2632	62.6866	50.3704	42	34	42	25	17	68.0000
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	69.8922	57.3374	89.4866	50.3641	1516	1128	366	43	39	90.6977
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	23.6905	15.0376	55.7971	50.3597	20	113	77	61	61	100.0000
egarrison-hhga	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	62.4864	45.7436	98.5612	50.3571	446	529	411	6	5	83.3333
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	67.8720	57.3310	83.1622	50.3568	2002	1490	1215	246	238	96.7480
ltrigg-rtg1	SNP	tv	HG002compoundhet	het	98.8241	98.0526	99.6078	50.3515	4582	91	4572	18	4	22.2222
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	37.7753	27.5229	60.2000	50.3476	120	316	301	199	199	100.0000
gduggal-bwavard	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.6054	97.3613	99.8818	50.3445	19666	533	19436	23	17	73.9130
dgrover-gatk	INDEL	*	func_cds	het	99.5392	100.0000	99.0826	50.3417	214	0	216	2	0	0.0000
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	65.9107	59.0529	74.5704	50.3413	212	147	217	74	67	90.5405
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5824	99.3478	97.8288	50.3389	4722	31	4731	105	95	90.4762
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	98.1954	96.9884	99.4328	50.3319	35490	1102	35413	202	180	89.1089
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	81.8190	98.1137	70.1659	50.3295	3589	69	3596	1529	1471	96.2067
ckim-isaac	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	67.5729	51.2864	99.0164	50.3257	299	284	302	3	3	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.5520	95.8237	99.3437	50.3216	16933	738	16803	111	74	66.6667

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge