PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57201-57250 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 78.5723 | 72.6344 | 85.5675 | 52.9869 | 10739 | 4046 | 10909 | 1840 | 1594 | 86.6304 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7531 | 99.6254 | 99.8811 | 52.9851 | 25264 | 95 | 25209 | 30 | 21 | 70.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1612 | 99.0320 | 99.2908 | 52.9835 | 2660 | 26 | 2660 | 19 | 2 | 10.5263 | |
| anovak-vg | INDEL | D1_5 | HG002complexvar | het | 92.0015 | 90.8693 | 93.1622 | 52.9821 | 18869 | 1896 | 19565 | 1436 | 834 | 58.0780 | |
| jli-custom | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 52.9801 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l125_m1_e0 | homalt | 65.3755 | 57.2079 | 76.2637 | 52.9793 | 9671 | 7234 | 9671 | 3010 | 2851 | 94.7176 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9556 | 99.9112 | 100.0000 | 52.9781 | 2250 | 2 | 2250 | 0 | 0 | ||
| ciseli-custom | SNP | * | tech_badpromoters | homalt | 95.5888 | 96.2500 | 94.9367 | 52.9762 | 77 | 3 | 75 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I1_5 | HG002complexvar | homalt | 99.8366 | 99.8959 | 99.7773 | 52.9712 | 13434 | 14 | 13440 | 30 | 28 | 93.3333 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2979 | 98.9492 | 99.6491 | 52.9703 | 565 | 6 | 568 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.4208 | 86.9067 | 66.6165 | 52.9703 | 531 | 80 | 443 | 222 | 213 | 95.9459 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002compoundhet | * | 3.4436 | 1.7941 | 42.7184 | 52.9680 | 42 | 2299 | 44 | 59 | 35 | 59.3220 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002compoundhet | het | 7.2324 | 3.9506 | 42.7184 | 52.9680 | 16 | 389 | 44 | 59 | 35 | 59.3220 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.4155 | 81.1111 | 94.7826 | 52.9652 | 219 | 51 | 218 | 12 | 11 | 91.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3079 | 97.1210 | 99.5241 | 52.9586 | 15585 | 462 | 15476 | 74 | 51 | 68.9189 | |
| gduggal-bwafb | SNP | ti | map_siren | homalt | 99.7291 | 99.5253 | 99.9338 | 52.9575 | 37736 | 180 | 37736 | 25 | 14 | 56.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 68.7372 | 91.6432 | 54.9921 | 52.9543 | 976 | 89 | 1388 | 1136 | 1069 | 94.1021 | |
| mlin-fermikit | INDEL | D6_15 | * | * | 87.9258 | 85.7734 | 90.1891 | 52.9541 | 22380 | 3712 | 22421 | 2439 | 2392 | 98.0730 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.3376 | 93.0985 | 97.6870 | 52.9536 | 3251 | 241 | 3252 | 77 | 70 | 90.9091 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.2421 | 98.0870 | 98.3978 | 52.9535 | 10870 | 212 | 10870 | 177 | 173 | 97.7401 | |
| ckim-vqsr | INDEL | I6_15 | * | * | 97.6524 | 96.7691 | 98.5520 | 52.9508 | 24021 | 802 | 24026 | 353 | 331 | 93.7677 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | * | 99.3818 | 99.0798 | 99.6856 | 52.9504 | 33055 | 307 | 32342 | 102 | 66 | 64.7059 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9663 | 95.1890 | 98.8113 | 52.9502 | 3324 | 168 | 3325 | 40 | 33 | 82.5000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 25.7821 | 22.7376 | 29.7679 | 52.9440 | 299 | 1016 | 295 | 696 | 682 | 97.9885 | |
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | het | 75.0000 | 75.0000 | 75.0000 | 52.9412 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | tech_badpromoters | * | 90.9091 | 88.2353 | 93.7500 | 52.9412 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | * | 93.7500 | 88.2353 | 100.0000 | 52.9412 | 15 | 2 | 16 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 52.9412 | 0 | 0 | 0 | 8 | 3 | 37.5000 | ||
| gduggal-snapfb | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 52.9412 | 8 | 4 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | het | 88.8889 | 80.0000 | 100.0000 | 52.9412 | 8 | 2 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 12 | 0 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | func_cds | het | 95.9350 | 100.0000 | 92.1875 | 52.9412 | 59 | 0 | 59 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | tech_badpromoters | het | 88.8889 | 80.0000 | 100.0000 | 52.9412 | 8 | 2 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | HG002complexvar | homalt | 99.8625 | 99.9182 | 99.8069 | 52.9404 | 13437 | 11 | 13442 | 26 | 26 | 100.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5640 | 99.8834 | 97.2789 | 52.9349 | 857 | 1 | 858 | 24 | 21 | 87.5000 | |
| ckim-vqsr | INDEL | I1_5 | HG002complexvar | homalt | 99.8514 | 99.8810 | 99.8217 | 52.9334 | 13432 | 16 | 13438 | 24 | 24 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | het | 99.1571 | 98.8268 | 99.4897 | 52.9280 | 11456 | 136 | 11308 | 58 | 18 | 31.0345 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 85.0307 | 86.8852 | 83.2536 | 52.9279 | 106 | 16 | 174 | 35 | 33 | 94.2857 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | homalt | 99.8588 | 99.9033 | 99.8143 | 52.9260 | 13435 | 13 | 13441 | 25 | 24 | 96.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.5431 | 94.7785 | 92.3395 | 52.9259 | 10528 | 580 | 10511 | 872 | 826 | 94.7248 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8891 | 94.9885 | 98.8674 | 52.9255 | 3317 | 175 | 3317 | 38 | 38 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.2098 | 85.2583 | 89.2527 | 52.9223 | 16934 | 2928 | 27995 | 3371 | 3181 | 94.3637 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 28.8874 | 67.7551 | 18.3569 | 52.9208 | 332 | 158 | 324 | 1441 | 1432 | 99.3754 | |