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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1137 1138 1139 1140 1141 1142 1143 1144 1145 ... 1720 1721 » 57001-57050 / 86044 show all
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	79.5287	70.4992	91.2109	53.4545	1864	780	467	45	45	100.0000
gduggal-snapfb	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	47.8883	35.6275	73.0159	53.4483	88	159	138	51	50	98.0392
ghariani-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	60.9341	95.6793	44.7012	53.4443	11980	541	12051	14908	14726	98.7792
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	92.9368	98.4252	88.0282	53.4426	125	2	125	17	16	94.1176
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	85.9048	76.5734	97.8261	53.4413	219	67	225	5	5	100.0000
cchapple-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.3820	97.9096	98.8590	53.4408	5480	117	13083	151	132	87.4172
hfeng-pmm2	SNP	*	map_siren	homalt	99.9075	99.9003	99.9148	53.4382	55101	55	55092	47	29	61.7021
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.9871	99.9318	98.0602	53.4268	1465	1	1466	29	19	65.5172
gduggal-bwafb	INDEL	*	tech_badpromoters	homalt	98.5075	100.0000	97.0588	53.4247	33	0	33	1	1	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7024	99.7469	99.6579	53.4220	6699	17	6701	23	8	34.7826
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7138	100.0000	99.4293	53.4182	2439	0	2439	14	0	0.0000
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.9561	99.6411	98.2804	53.4169	8330	30	8287	145	135	93.1034
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.9561	99.6411	98.2804	53.4169	8330	30	8287	145	135	93.1034
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.0495	96.4138	99.7416	53.4125	16561	616	16599	43	38	88.3721
egarrison-hhga	SNP	*	map_siren	homalt	99.8639	99.7770	99.9510	53.4112	55033	123	55033	27	24	88.8889
mlin-fermikit	SNP	*	map_l100_m0_e0	*	59.6148	45.9548	84.8308	53.4081	15092	17749	15088	2698	2419	89.6590
ltrigg-rtg2	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.3714	93.4840	99.4429	53.4069	703	49	714	4	4	100.0000
hfeng-pmm1	SNP	*	map_siren	homalt	99.8994	99.8803	99.9184	53.4037	55090	66	55084	45	26	57.7778
anovak-vg	INDEL	*	HG002complexvar	*	72.8155	71.0364	74.6860	53.4026	54654	22284	56069	19004	16560	87.1395
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	45.1709	65.4521	34.4852	53.4012	485	256	489	929	918	98.8159
gduggal-snapfb	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	79.1493	72.0787	87.7579	53.3974	4910	1902	638	89	89	100.0000
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	82.5030	79.8704	85.3152	53.3915	8872	2236	10353	1782	570	31.9865
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	53.3915	481	0	481	0	0
jmaeng-gatk	INDEL	I6_15	*	*	97.3971	96.5435	98.2659	53.3907	23965	858	23970	423	364	86.0520
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	88.7097	79.7101	100.0000	53.3898	55	14	55	0	0
qzeng-custom	INDEL	D1_5	*	homalt	99.2131	98.9883	99.4390	53.3870	48431	495	48391	273	239	87.5458
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	82.1683	78.7720	85.8708	53.3827	1655	446	1568	258	253	98.0620
gduggal-snapfb	INDEL	D6_15	*	homalt	84.4844	84.4926	84.4762	53.3817	5345	981	5322	978	974	99.5910
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	85.2150	75.8321	97.2477	53.3761	1481	472	1484	42	37	88.0952
gduggal-snapplat	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	26.5124	15.4269	94.2105	53.3742	365	2001	358	22	17	77.2727
gduggal-snapvard	SNP	ti	HG002compoundhet	het	77.4625	83.1755	72.4839	53.3720	7905	1599	9096	3453	1426	41.2974
ckim-isaac	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	90.3594	91.9064	88.8636	53.3705	5144	453	4684	587	468	79.7274
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	35.0904	39.3443	31.6667	53.3679	48	74	57	123	84	68.2927
ltrigg-rtg2	SNP	tv	map_l100_m2_e0	het	98.8114	98.0098	99.6262	53.3646	15463	314	15459	58	2	3.4483
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	72.0736	97.5227	57.1579	53.3629	1614	41	1625	1218	1207	99.0969
rpoplin-dv42	SNP	ti	map_siren	*	99.6562	99.5227	99.7902	53.3616	99876	479	99868	210	138	65.7143
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.0020	98.6553	99.3511	53.3614	27880	380	59096	386	365	94.5596
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	68.9441	52.6066	100.0000	53.3613	111	100	111	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.6745	96.2080	99.1864	53.3595	7104	280	7071	58	53	91.3793
ckim-gatk	SNP	ti	map_siren	homalt	91.8305	84.9219	99.9627	53.3585	32199	5717	32193	12	11	91.6667
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.2064	95.5068	98.9676	53.3545	16877	794	16872	176	162	92.0455
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.2064	95.5068	98.9676	53.3545	16877	794	16872	176	162	92.0455
rpoplin-dv42	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.2087	89.1575	93.3565	53.3541	3503	426	3499	249	235	94.3775
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	35.3630	32.4556	38.8425	53.3428	4474	9311	4470	7038	6992	99.3464
gduggal-bwaplat	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	91.2939	84.4229	99.3824	53.3363	2092	386	2092	13	1	7.6923
gduggal-bwafb	INDEL	D6_15	tech_badpromoters	homalt	92.3077	100.0000	85.7143	53.3333	6	0	6	1	1	100.0000
eyeh-varpipe	INDEL	D6_15	tech_badpromoters	homalt	100.0000	100.0000	100.0000	53.3333	6	0	7	0	0
hfeng-pmm3	INDEL	I6_15	tech_badpromoters	het	100.0000	100.0000	100.0000	53.3333	7	0	7	0	0
hfeng-pmm1	INDEL	I6_15	tech_badpromoters	het	100.0000	100.0000	100.0000	53.3333	7	0	7	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	*	70.0000	53.8462	100.0000	53.3333	7	6	7	0	0

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