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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1136 1137 1138 1139 1140 1141 1142 1143 1144 ... 1720 1721 » 56951-57000 / 86044 show all
hfeng-pmm1	SNP	*	map_siren	het	99.5907	99.3571	99.8255	53.5727	90406	585	90392	158	38	24.0506
hfeng-pmm1	INDEL	I6_15	tech_badpromoters	*	100.0000	100.0000	100.0000	53.5714	13	0	13	0	0
hfeng-pmm2	INDEL	I6_15	tech_badpromoters	*	100.0000	100.0000	100.0000	53.5714	13	0	13	0	0
hfeng-pmm3	SNP	tv	tech_badpromoters	homalt	100.0000	100.0000	100.0000	53.5714	39	0	39	0	0
jli-custom	INDEL	I6_15	tech_badpromoters	*	100.0000	100.0000	100.0000	53.5714	13	0	13	0	0
hfeng-pmm3	INDEL	I6_15	tech_badpromoters	*	100.0000	100.0000	100.0000	53.5714	13	0	13	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	28.0467	29.2683	26.9231	53.5714	12	29	14	38	20	52.6316
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7774	99.7208	99.8342	53.5684	6071	17	6021	10	8	80.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4518	99.8428	99.0640	53.5675	2540	4	2540	24	0	0.0000
gduggal-snapplat	INDEL	*	func_cds	*	70.8193	61.5730	83.3333	53.5627	274	171	315	63	1	1.5873
cchapple-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.0126	97.4325	98.5996	53.5616	15635	412	16687	237	217	91.5612
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	99.0354	98.0892	100.0000	53.5604	154	3	150	0	0
jlack-gatk	INDEL	I6_15	*	homalt	95.8674	99.6474	92.3637	53.5505	6217	22	6217	514	507	98.6381
gduggal-snapplat	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	49.8073	51.0638	48.6111	53.5484	24	23	35	37	30	81.0811
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.3263	98.8086	99.8495	53.5477	2654	32	2654	4	0	0.0000
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	78.9525	73.1884	85.7021	53.5402	303	111	1001	167	136	81.4371
ltrigg-rtg2	SNP	ti	map_l100_m0_e0	*	98.7646	97.6758	99.8779	53.5389	21265	506	21269	26	7	26.9231
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	hetalt	100.0000	100.0000	100.0000	53.5354	1	0	46	0	0
hfeng-pmm1	SNP	*	map_siren	*	99.7072	99.5541	99.8607	53.5315	145576	652	145556	203	64	31.5271
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	90.1687	84.9804	96.0316	53.5294	7146	1263	7163	296	207	69.9324
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5537	99.1915	99.9186	53.5276	6134	50	6134	5	0	0.0000
ltrigg-rtg2	SNP	*	map_l100_m1_e0	*	99.2192	98.6340	99.8113	53.5259	71414	989	71410	135	22	16.2963
gduggal-bwafb	INDEL	*	HG002complexvar	homalt	97.6327	97.4544	97.8116	53.5251	26339	688	26326	589	564	95.7555
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	88.0249	90.0274	86.1096	53.5183	5263	583	4761	768	648	84.3750
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	88.0249	90.0274	86.1096	53.5183	5263	583	4761	768	648	84.3750
eyeh-varpipe	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	70.9466	66.7041	75.7654	53.5142	10704	5343	10864	3475	3422	98.4748
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.9925	98.5647	99.4241	53.5139	14558	212	14501	84	48	57.1429
egarrison-hhga	INDEL	I6_15	HG002complexvar	homalt	96.2063	97.0346	95.3921	53.5137	1178	36	1180	57	43	75.4386
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	94.7368	99.2126	90.6475	53.5117	126	1	126	13	12	92.3077
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	79.4286	65.8768	100.0000	53.5117	139	72	139	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	94.7368	99.2126	90.6475	53.5117	126	1	126	13	12	92.3077
cchapple-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8760	99.7722	99.9801	53.5072	10074	23	10033	2	1	50.0000
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.6770	98.2373	99.1206	53.5009	24912	447	24909	221	216	97.7376
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.9120	98.2491	99.5839	53.4969	24915	444	24890	104	67	64.4231
eyeh-varpipe	INDEL	I1_5	*	*	94.9923	93.5665	96.4622	53.4954	140971	9693	141103	5175	4944	95.5362
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.0502	96.4694	97.6380	53.4915	14263	522	14261	345	337	97.6812
gduggal-snapvard	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	70.7753	78.9709	64.1209	53.4898	4420	1177	8614	4820	4189	86.9087
ltrigg-rtg2	SNP	tv	map_l100_m2_e1	het	98.8079	98.0299	99.5983	53.4836	15624	314	15620	63	2	3.1746
jlack-gatk	SNP	tv	map_siren	homalt	99.5956	99.2807	99.9124	53.4780	17116	124	17113	15	10	66.6667
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	89.4089	97.4545	82.5903	53.4716	804	21	1760	371	336	90.5660
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	89.4089	97.4545	82.5903	53.4716	804	21	1760	371	336	90.5660
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.4136	99.6124	99.2157	53.4672	257	1	253	2	2	100.0000
anovak-vg	INDEL	I1_5	*	*	54.8287	54.8578	54.7996	53.4671	82651	68013	84844	69982	59671	85.2662
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	90.6667	82.9268	100.0000	53.4653	272	56	47	0	0
eyeh-varpipe	SNP	tv	HG002compoundhet	homalt	96.9051	99.4687	94.4704	53.4614	3370	18	1213	71	32	45.0704
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	78.7119	72.4534	86.1538	53.4606	505	192	504	81	80	98.7654
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7332	99.6004	99.8664	53.4604	2243	9	2243	3	1	33.3333
hfeng-pmm3	INDEL	*	tech_badpromoters	*	98.6667	97.3684	100.0000	53.4591	74	2	74	0	0
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	62.1592	62.6870	61.6403	53.4558	19107	11373	30086	18723	13632	72.8088
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	62.1592	62.6870	61.6403	53.4558	19107	11373	30086	18723	13632	72.8088

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