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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1132 1133 1134 1135 1136 1137 1138 1139 1140 ... 1720 1721 » 56751-56800 / 86044 show all
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	94.5946	89.7436	100.0000	53.9474	35	4	35	0	0
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3449	98.6984	100.0000	53.9460	1744	23	1739	0	0
jpowers-varprowl	INDEL	I16_PLUS	*	homalt	77.5728	66.5599	92.9527	53.9441	1039	522	1042	79	78	98.7342
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	95.8055	92.0455	99.8858	53.9432	891	77	875	1	1	100.0000
anovak-vg	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	47.6231	55.9322	41.4634	53.9326	33	26	34	48	35	72.9167
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	85.0575	80.4348	90.2439	53.9326	37	9	37	4	4	100.0000
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.2106	96.5536	99.9255	53.9316	10702	382	10737	8	3	37.5000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.3157	96.8617	97.7740	53.9248	14321	464	14319	326	316	96.9325
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9263	99.9017	99.9509	53.9245	10168	10	10168	5	5	100.0000
ltrigg-rtg2	INDEL	D1_5	*	het	99.5293	99.4473	99.6114	53.9225	87090	484	86889	339	71	20.9440
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	87.0370	77.0492	100.0000	53.9216	47	14	47	0	0
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3619	99.0333	99.6927	53.9179	3893	38	3893	12	0	0.0000
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	49.1036	34.5238	85.0000	53.9171	58	110	85	15	15	100.0000
gduggal-bwafb	INDEL	*	HG002complexvar	het	96.3773	93.9496	98.9337	53.9146	43416	2796	46670	503	367	72.9622
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.8947	98.7270	95.1293	53.9091	7290	94	7285	373	354	94.9062
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.3693	98.9623	99.7797	53.9086	1812	19	1812	4	0	0.0000
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	98.8309	99.3772	98.2905	53.9062	6702	42	6727	117	6	5.1282
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.3304	96.9158	97.7485	53.9045	14329	456	14327	330	320	96.9697
ndellapenna-hhga	INDEL	I6_15	HG002complexvar	hetalt	95.3564	92.8046	98.0525	53.9032	1135	88	1158	23	21	91.3043
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5211	99.2995	97.7547	53.9013	567	4	566	13	13	100.0000
ckim-gatk	SNP	*	*	hetalt	98.6111	97.8186	99.4166	53.8999	852	19	852	5	4	80.0000
ckim-gatk	SNP	tv	*	hetalt	98.6111	97.8186	99.4166	53.8999	852	19	852	5	4	80.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	95.2285	93.2851	97.2547	53.8987	903	65	3082	87	61	70.1149
ciseli-custom	INDEL	D6_15	*	*	61.9102	60.9636	62.8867	53.8982	15906	10185	15938	9406	6255	66.5001
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7100	99.6561	99.7639	53.8981	10143	35	10141	24	24	100.0000
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8658	99.8462	99.8855	53.8968	27916	43	27913	32	19	59.3750
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.6129	84.5238	100.0000	53.8961	71	13	71	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.6129	84.5238	100.0000	53.8961	71	13	71	0	0
dgrover-gatk	SNP	tv	tech_badpromoters	*	97.9021	97.2222	98.5915	53.8961	70	2	70	1	1	100.0000
jli-custom	SNP	*	map_siren	het	99.5222	99.4681	99.5764	53.8949	90507	484	90501	385	76	19.7403
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.1514	97.5955	98.7136	53.8931	21715	535	21716	283	267	94.3463
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.7634	99.7296	99.7971	53.8905	2951	8	2951	6	1	16.6667
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	83.8622	76.0787	93.4198	53.8889	1005	316	1008	71	48	67.6056
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.2070	98.3037	98.1104	53.8870	5969	103	5971	115	80	69.5652
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.7994	98.6540	98.9452	53.8867	10041	137	10037	107	106	99.0654
jlack-gatk	SNP	*	*	hetalt	99.0280	99.4259	98.6333	53.8866	866	5	866	12	11	91.6667
jlack-gatk	SNP	tv	*	hetalt	99.0280	99.4259	98.6333	53.8866	866	5	866	12	11	91.6667
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	80.2748	93.5927	70.2749	53.8827	409	28	409	173	173	100.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8105	100.0000	99.6217	53.8819	1580	0	1580	6	0	0.0000
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	82.0986	72.9041	93.9468	53.8786	4609	1713	4625	298	190	63.7584
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	82.0986	72.9041	93.9468	53.8786	4609	1713	4625	298	190	63.7584
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	91.7813	89.3878	94.3066	53.8721	657	78	646	39	38	97.4359
jli-custom	INDEL	I6_15	HG002complexvar	homalt	99.0196	99.8353	98.2172	53.8692	1212	2	1212	22	22	100.0000
jmaeng-gatk	INDEL	D1_5	func_cds	*	97.8593	100.0000	95.8084	53.8674	159	0	160	7	0	0.0000
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2813	99.4514	97.1385	53.8661	11421	63	11406	336	321	95.5357
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7127	99.6993	99.7261	53.8549	3647	11	3641	10	3	30.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	79.3964	87.2325	72.8520	53.8546	2446	358	2442	910	909	99.8901
rpoplin-dv42	SNP	ti	map_siren	het	99.5664	99.3973	99.7362	53.8516	62006	376	61997	164	94	57.3171
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6370	99.4177	99.8572	53.8488	14684	86	14686	21	13	61.9048
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	44.6735	50.6428	39.9631	53.8471	1103	1075	3030	4552	3067	67.3770

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