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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1130 1131 1132 1133 1134 1135 1136 1137 1138 ... 1720 1721 » 56651-56700 / 86044 show all
qzeng-custom	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	54.0984	0	0	0	56	0	0.0000
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	79.2079	65.5738	100.0000	54.0984	40	21	28	0	0
ltrigg-rtg1	SNP	*	tech_badpromoters	het	95.6522	100.0000	91.6667	54.0984	77	0	77	7	0	0.0000
asubramanian-gatk	INDEL	D6_15	func_cds	het	98.2456	96.5517	100.0000	54.0984	28	1	28	0	0
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7252	99.5058	99.9456	54.0983	14697	73	14698	8	4	50.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9411	99.9607	99.9214	54.0979	10174	4	10174	8	8	100.0000
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.6458	97.9754	99.3253	54.0950	1355	28	1325	9	5	55.5556
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	63.9411	49.6269	89.8601	54.0931	266	270	257	29	29	100.0000
gduggal-snapfb	INDEL	*	HG002complexvar	homalt	93.4910	91.9932	95.0384	54.0929	24863	2164	24901	1300	829	63.7692
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	61.0169	43.9024	100.0000	54.0925	144	184	129	0	0
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.1274	99.6491	98.6111	54.0914	852	3	852	12	0	0.0000
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	98.0823	99.0065	97.1751	54.0902	6677	67	6708	195	42	21.5385
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	79.3402	78.0000	80.7273	54.0902	39	11	222	53	26	49.0566
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	35.9715	48.9362	28.4375	54.0890	92	96	91	229	220	96.0699
anovak-vg	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.6034	98.8995	98.3091	54.0884	6021	67	6221	107	43	40.1869
gduggal-bwaplat	INDEL	I16_PLUS	*	hetalt	78.3575	65.0620	98.4827	54.0810	1365	733	1363	21	19	90.4762
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	78.0161	64.7448	98.1308	54.0773	1763	960	105	2	2	100.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2900	98.8833	99.7000	54.0745	6641	75	6647	20	7	35.0000
raldana-dualsentieon	INDEL	I1_5	*	homalt	99.6902	99.8428	99.5381	54.0742	60333	95	60337	280	279	99.6429
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2357	98.7135	99.7636	54.0717	844	11	844	2	0	0.0000
ndellapenna-hhga	INDEL	*	HG002complexvar	het	97.4850	96.9835	97.9917	54.0711	44818	1394	44840	919	671	73.0141
ckim-isaac	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	96.5147	94.2784	98.8597	54.0704	52448	3183	52797	609	355	58.2923
cchapple-custom	INDEL	*	tech_badpromoters	*	99.3377	98.6842	100.0000	54.0698	75	1	79	0	0
jpowers-varprowl	SNP	ti	map_siren	homalt	99.6196	99.4567	99.7830	54.0684	37710	206	37711	82	57	69.5122
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5852	99.4085	99.7626	54.0647	25209	150	25209	60	50	83.3333
anovak-vg	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	60.6700	53.9166	69.3576	54.0626	3063	2618	3239	1431	1089	76.1006
ckim-isaac	INDEL	D16_PLUS	*	homalt	88.9191	81.0875	98.4252	54.0612	1372	320	1375	22	6	27.2727
mlin-fermikit	SNP	*	map_l100_m1_e0	het	71.0748	55.5458	98.6565	54.0604	25195	20164	25187	343	11	3.2070
mlin-fermikit	SNP	ti	map_l125_m0_e0	homalt	56.8886	46.9829	72.0875	54.0574	2110	2381	2110	817	761	93.1457
jpowers-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	52.8814	39.9386	78.2347	54.0553	780	1173	780	217	203	93.5484
egarrison-hhga	INDEL	I1_5	HG002complexvar	*	98.9362	98.5823	99.2928	54.0549	32890	473	32852	234	120	51.2821
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	96.0973	94.2308	98.0392	54.0541	49	3	50	1	0	0.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	98.0392	96.1538	100.0000	54.0541	50	2	51	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.0714	83.6066	100.0000	54.0541	51	10	51	0	0
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	98.0392	96.1538	100.0000	54.0541	50	2	51	0	0
mlin-fermikit	INDEL	D6_15	tech_badpromoters	*	88.2353	88.2353	88.2353	54.0541	15	2	15	2	2	100.0000
rpoplin-dv42	INDEL	D6_15	tech_badpromoters	*	94.1176	94.1176	94.1176	54.0541	16	1	16	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2720	98.6962	99.8546	54.0539	8251	109	8239	12	12	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2720	98.6962	99.8546	54.0539	8251	109	8239	12	12	100.0000
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.7005	42.6942	99.2246	54.0503	4903	6581	4863	38	33	86.8421
ltrigg-rtg2	SNP	tv	map_l100_m0_e0	*	98.6223	97.5189	99.7508	54.0500	10809	275	10808	27	2	7.4074
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.0288	97.3348	98.7327	54.0492	21657	593	21658	278	267	96.0432
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9312	99.9214	99.9410	54.0442	10170	8	10170	6	6	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1261	99.3893	98.8642	54.0422	3743	23	3743	43	42	97.6744
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1261	99.3893	98.8642	54.0422	3743	23	3743	43	42	97.6744
egarrison-hhga	SNP	*	map_siren	het	99.5365	99.2384	99.8364	54.0342	90298	693	90299	148	53	35.8108
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.0475	97.3843	98.7198	54.0333	21668	582	21669	281	267	95.0178
asubramanian-gatk	INDEL	I16_PLUS	HG002compoundhet	*	92.8089	90.2940	95.4680	54.0308	1935	208	1938	92	88	95.6522
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	90.5469	89.2517	91.8803	54.0275	656	79	645	57	56	98.2456
ltrigg-rtg2	SNP	tv	map_l100_m1_e0	*	99.1748	98.6001	99.7563	54.0248	24158	343	24152	59	5	8.4746

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