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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
56501-56550 / 86044 show all
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.1059
96.1538
98.0769
54.3860
5025110
0.0000
ghariani-varprowlINDELI16_PLUS*homalt
77.5054
66.3037
93.2615
54.3852
103552610387574
98.6667
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7626
99.5802
99.9456
54.3815
14708621470984
50.0000
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9361
99.9509
99.9214
54.3780
1017351017388
100.0000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
99.2405
99.4924
98.9899
54.3779
196119622
100.0000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7867
99.6017
99.9723
54.3769
252581012526073
42.8571
gduggal-bwavardSNPtvmap_sirenhomalt
98.5863
97.3028
99.9041
54.3761
16775465166651612
75.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
76.3362
74.6667
78.0822
54.3750
5619571614
87.5000
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
89.6510
84.0909
95.9984
54.3693
495893823519896
97.9592
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
89.6510
84.0909
95.9984
54.3693
495893823519896
97.9592
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_triTR_51to200het
48.7099
38.0000
67.8261
54.3651
193178379
24.3243
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.8957
98.4694
99.3257
54.3646
195583041959213345
33.8346
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9507
99.9671
99.9343
54.3615
60862608644
100.0000
eyeh-varpipeINDELD1_5HG002complexvarhomalt
96.8706
98.8677
94.9525
54.3549
1047812010196542535
98.7085
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
51.7828
35.4521
96.0081
54.3492
241543972862119117
98.3193
mlin-fermikitINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
73.2776
67.1436
80.6452
54.3490
267513092675642605
94.2368
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7987
99.8821
99.7155
54.3488
1016612101642924
82.7586
cchapple-customINDELI1_5tech_badpromoters*
100.0000
100.0000
100.0000
54.3478
2202100
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9362
99.9607
99.9116
54.3466
1017441017499
100.0000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.5625
95.5867
86.0400
54.3416
5588258134732186990
45.2882
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.5625
95.5867
86.0400
54.3416
5588258134732186990
45.2882
jlack-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9343
99.9507
99.9179
54.3410
60853608555
100.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
74.9014
73.1006
76.7932
54.3353
356131364110109
99.0909
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9214
99.9312
99.9116
54.3329
1017171016799
100.0000
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0206
99.3362
98.7071
54.3318
37412537414945
91.8367
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0206
99.3362
98.7071
54.3318
37412537414945
91.8367
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.3849
98.2708
96.5148
54.3311
100021769831355280
78.8732
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.6672
99.9578
97.4095
54.3286
2369123696362
98.4127
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9411
99.9607
99.9214
54.3285
1017441017488
100.0000
ghariani-varprowlINDELI6_15*het
73.9358
94.0397
60.9136
54.3281
9435598949460926035
99.0643
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9116
99.9214
99.9018
54.3272
101708101701010
100.0000
mlin-fermikitSNPtvHG002compoundhethet
90.8488
84.0146
98.8934
54.3251
39267473932448
18.1818
ltrigg-rtg1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.3773
91.9938
99.0193
54.3250
295325729282929
100.0000
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9097
99.9179
99.9015
54.3245
60835608364
66.6667
mlin-fermikitINDEL*HG002complexvar*
95.4305
94.5346
96.3436
54.3245
7273342057235627462618
95.3387
ghariani-varprowlSNP*map_sirenhomalt
99.5027
99.3944
99.6112
54.3239
5482233454823214127
59.3458
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
73.3622
60.1943
93.9043
54.3233
365524173651237195
82.2785
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9362
99.9607
99.9116
54.3220
1017441017499
100.0000
jli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8713
99.8037
99.9390
54.3200
14741291474294
44.4444
ckim-isaacSNP*map_l100_m1_e0homalt
73.0435
57.5492
99.9550
54.3192
15540114631554077
100.0000
gduggal-snapplatINDELD6_15HG002compoundhethomalt
5.2905
29.1667
2.9091
54.3189
7178267226
84.6442
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
26.8433
15.6323
94.9091
54.3189
26714412611410
71.4286
ghariani-varprowlSNP*tech_badpromoters*
96.5732
98.7261
94.5122
54.3175
155215592
22.2222
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9312
99.9607
99.9018
54.3175
101744101741010
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8131
99.6954
99.9311
54.3062
10147311014877
100.0000
ltrigg-rtg2INDELD1_5*homalt
99.7038
99.4298
99.9794
54.3049
4864727948525109
90.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9214
99.9214
99.9214
54.3038
1017081016988
100.0000
raldana-dualsentieonSNP*map_siren*
99.5640
99.5698
99.5582
54.3006
14559962914557664630
4.6440
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
21.7822
12.3499
92.2018
54.2977
725112011717
100.0000
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
22.1585
18.8343
26.9076
54.2967
740318973720021995
99.6503