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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1126 1127 1128 1129 1130 1131 1132 1133 1134 ... 1720 1721 » 56451-56500 / 86044 show all
ghariani-varprowl	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	96.5798	99.2191	94.0773	54.5022	18041	142	18092	1139	144	12.6427
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.4672	99.8135	97.1567	54.5004	1606	3	1606	47	36	76.5957
jlack-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	89.2273	86.8923	91.6913	54.4965	3414	515	3410	309	298	96.4401
ltrigg-rtg2	SNP	tv	map_l125_m0_e0	het	97.3350	95.0239	99.7613	54.4961	4182	219	4180	10	0	0.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.6444	99.7860	95.5928	54.4932	2798	6	2798	129	127	98.4496
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	43.3697	38.1944	50.1672	54.4901	110	178	300	298	216	72.4832
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6427	99.5150	99.7707	54.4892	25236	123	25236	58	45	77.5862
mlin-fermikit	SNP	ti	map_l100_m2_e0	*	73.5756	61.3876	91.8021	54.4848	30056	18905	30056	2684	2362	88.0030
gduggal-snapvard	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.0062	96.7177	99.3296	54.4844	19536	663	19261	130	58	44.6154
bgallagher-sentieon	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	92.9104	91.7791	94.0700	54.4828	3606	323	3601	227	215	94.7137
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6468	99.8821	99.4127	54.4823	2541	3	2539	15	1	6.6667
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4987	99.1235	99.8768	54.4784	16285	144	16208	20	7	35.0000
egarrison-hhga	INDEL	*	HG002complexvar	het	97.6548	97.3665	97.9448	54.4695	44995	1217	44989	944	675	71.5042
gduggal-snapvard	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.0746	98.4739	97.6786	54.4653	24972	387	25036	595	449	75.4622
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	91.1134	93.7764	88.5975	54.4652	1552	103	1554	200	192	96.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.0714	83.6066	100.0000	54.4643	51	10	51	0	0
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	98.0392	96.1538	100.0000	54.4643	50	2	51	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6201	99.5533	99.6870	54.4597	6686	30	6688	21	7	33.3333
ndellapenna-hhga	INDEL	D6_15	HG002compoundhet	homalt	18.1818	100.0000	10.0000	54.4592	24	0	24	216	151	69.9074
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.5597	98.9214	96.2349	54.4582	642	7	639	25	25	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.1949	97.6719	98.7235	54.4572	21732	518	21733	281	265	94.3060
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7099	99.7915	99.6285	54.4538	6702	14	6704	25	8	32.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	96.9036	99.8930	94.0880	54.4523	2801	3	2801	176	175	99.4318
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	84.7851	78.2485	92.5134	54.4520	1644	457	1557	126	122	96.8254
ltrigg-rtg1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	95.4063	91.4601	99.7085	54.4489	332	31	342	1	1	100.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.3316	99.5905	99.0741	54.4458	2675	11	2675	25	0	0.0000
jpowers-varprowl	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.2043	97.0166	97.3928	54.4393	10959	337	10945	293	257	87.7133
ltrigg-rtg1	INDEL	D1_5	HG002complexvar	*	99.1020	98.6275	99.5810	54.4390	32266	449	32088	135	85	62.9630
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9343	99.9343	99.9343	54.4380	6084	4	6084	4	4	100.0000
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	84.0237	77.1739	92.2078	54.4379	71	21	71	6	4	66.6667
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	60.0475	46.9799	83.1858	54.4355	70	79	94	19	19	100.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.8473	99.8104	95.9599	54.4297	3159	6	3159	133	131	98.4962
ghariani-varprowl	INDEL	*	func_cds	het	90.6725	97.6636	84.6154	54.4280	209	5	209	38	29	76.3158
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	90.6611	90.9091	90.4145	54.4274	340	34	349	37	21	56.7568
qzeng-custom	INDEL	I6_15	HG002complexvar	*	92.2263	91.5275	92.9358	54.4267	4386	406	4473	340	144	42.3529
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8767	99.8193	99.9342	54.4187	6077	11	6077	4	4	100.0000
ckim-isaac	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	70.5909	54.8571	98.9796	54.4186	96	79	97	1	1	100.0000
ckim-isaac	INDEL	I16_PLUS	*	*	74.7295	62.4588	93.0005	54.4140	3983	2394	3986	300	193	64.3333
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	77.6732	71.7391	84.6774	54.4118	66	26	105	19	19	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8105	99.6688	99.9525	54.4112	25275	84	25277	12	7	58.3333
ltrigg-rtg2	SNP	tv	map_l125_m1_e0	het	98.4494	97.1855	99.7466	54.4068	9841	285	9840	25	2	8.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	91.4168	88.8435	94.1435	54.4059	653	82	643	40	39	97.5000
gduggal-bwafb	INDEL	D1_5	HG002complexvar	het	98.1510	96.8794	99.4564	54.4051	20117	648	20856	114	44	38.5965
jpowers-varprowl	INDEL	D6_15	*	het	70.9404	91.9945	57.7285	54.4042	10664	928	10689	7827	7764	99.1951
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	96.5155	99.7628	93.4730	54.4025	6728	16	6559	458	33	7.2052
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7512	99.6892	99.8133	54.3984	1604	5	1604	3	2	66.6667
egarrison-hhga	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	73.4644	67.6763	80.3352	54.3953	2659	1270	2684	657	598	91.0198
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9343	99.9343	99.9343	54.3868	6084	4	6084	4	4	100.0000
gduggal-snapplat	SNP	*	map_siren	homalt	97.4154	95.0214	99.9332	54.3867	52410	2746	52361	35	23	65.7143
ghariani-varprowl	INDEL	*	tech_badpromoters	het	81.3187	94.8718	71.1538	54.3860	37	2	37	15	15	100.0000

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