PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1124 1125 1126 1127 1128 1129 1130 1131 1132 ... 1720 1721 » 56351-56400 / 86044 show all
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	95.3656	94.1057	96.6597	54.6402	463	29	463	16	13	81.2500
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.1397	99.2867	95.0836	54.6384	2784	20	2785	144	133	92.3611
ltrigg-rtg2	INDEL	D6_15	HG002compoundhet	het	97.1219	96.8458	97.3995	54.6381	829	27	824	22	16	72.7273
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7823	99.6892	99.8755	54.6328	1604	5	1604	2	1	50.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	92.9102	91.2700	94.6103	54.6326	3586	343	3581	204	197	96.5686
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	97.9167	100.0000	95.9184	54.6296	47	0	47	2	2	100.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	97.9167	100.0000	95.9184	54.6296	47	0	47	2	2	100.0000
ltrigg-rtg1	SNP	*	map_l100_m1_e0	het	98.9962	98.2804	99.7226	54.6285	44579	780	44576	124	12	9.6774
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8235	97.6744	100.0000	54.6263	252	6	255	0	0
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7998	99.6004	100.0000	54.6227	2243	9	2243	0	0
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	60.8920	54.0284	69.7531	54.6218	114	97	113	49	49	100.0000
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7449	99.5401	99.9505	54.6217	6060	28	6060	3	3	100.0000
ltrigg-rtg1	SNP	ti	map_l100_m1_e0	het	99.0192	98.2900	99.7593	54.6205	29430	512	29432	71	7	9.8592
ghariani-varprowl	INDEL	I1_5	HG002complexvar	*	92.9673	92.2577	93.6879	54.6199	30779	2583	30650	2065	1585	76.7554
ltrigg-rtg1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.1505	94.9192	99.4892	54.6175	3699	198	3701	19	11	57.8947
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6165	99.4259	99.8079	54.6157	3637	21	3636	7	2	28.5714
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.4273	99.5631	99.2919	54.6106	1823	8	1823	13	0	0.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	85.4414	79.6287	92.1694	54.6077	1673	428	1589	135	130	96.2963
gduggal-snapplat	SNP	*	tech_badpromoters	homalt	92.6174	86.2500	100.0000	54.6053	69	11	69	0	0
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	95.0984	91.2587	99.2754	54.6053	261	25	274	2	2	100.0000
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.0138	96.9458	97.0818	54.6044	10951	345	10945	329	249	75.6839
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6996	97.7430	99.6751	54.6036	3681	85	3681	12	7	58.3333
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6996	97.7430	99.6751	54.6036	3681	85	3681	12	7	58.3333
ndellapenna-hhga	INDEL	I1_5	HG002complexvar	het	98.8489	98.2847	99.4197	54.6026	17877	312	17818	104	33	31.7308
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	33.2123	28.3742	40.0394	54.5997	1726	4357	3049	4566	3071	67.2580
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7119	99.4908	99.9340	54.5993	6057	31	6057	4	4	100.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8263	99.7319	99.9210	54.5963	25291	68	25293	20	15	75.0000
ckim-isaac	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	96.1516	93.6330	98.8095	54.5946	250	17	249	3	1	33.3333
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.0468	95.1501	99.0206	54.5933	3708	189	3842	38	35	92.1053
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9671	99.9671	99.9671	54.5909	6086	2	6086	2	2	100.0000
bgallagher-sentieon	INDEL	I6_15	*	homalt	97.0258	99.8718	94.3376	54.5892	6231	8	6231	374	371	99.1979
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	98.4653	97.5659	99.3814	54.5880	481	12	482	3	3	100.0000
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	52.1835	44.7148	62.6476	54.5878	2720	3363	3237	1930	985	51.0363
rpoplin-dv42	SNP	tv	HG002compoundhet	het	99.5284	99.3794	99.6779	54.5836	4644	29	4642	15	10	66.6667
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	74.4444	94.3662	61.4679	54.5833	67	4	67	42	42	100.0000
ndellapenna-hhga	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	72.9555	67.4217	79.4788	54.5797	2649	1280	2684	693	618	89.1775
hfeng-pmm3	SNP	*	map_siren	het	99.6837	99.5824	99.7852	54.5786	90611	380	90597	195	18	9.2308
bgallagher-sentieon	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7144	99.8963	99.5331	54.5778	27930	29	27929	131	10	7.6336
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	70.1122	60.5452	83.2700	54.5769	422	275	438	88	86	97.7273
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	67.0371	50.6098	99.2537	54.5763	166	162	133	1	0	0.0000
jpowers-varprowl	INDEL	*	HG002complexvar	*	91.1605	89.9127	92.4435	54.5762	69177	7761	68949	5636	5349	94.9077
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6527	99.7736	99.5322	54.5761	6170	14	6170	29	0	0.0000
gduggal-snapfb	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	63.0796	53.0658	77.7518	54.5745	476	421	332	95	46	48.4211
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6443	99.5626	99.7262	54.5715	3642	16	3642	10	5	50.0000
gduggal-bwavard	INDEL	D1_5	HG002complexvar	*	93.5349	92.9971	94.0789	54.5678	30424	2291	28886	1818	1258	69.1969
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8006	99.6609	99.9407	54.5675	25273	86	25275	15	11	73.3333
raldana-dualsentieon	INDEL	I6_15	HG002complexvar	hetalt	95.1115	90.6787	100.0000	54.5670	1109	114	1149	0	0
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9425	99.9507	99.9343	54.5644	6085	3	6088	4	4	100.0000
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4978	99.2429	99.7541	54.5635	25167	192	25148	62	34	54.8387
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3915	99.3915	99.3915	54.5622	490	3	490	3	2	66.6667

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge