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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
56251-56300 / 86044 show all
rpoplin-dv42INDELD6_15func_cds*
94.1176
93.0233
95.2381
54.8387
4034022
100.0000
jpowers-varprowlSNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.2384
98.5913
97.8879
54.8387
664995667414410
6.9444
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
64.3678
47.4576
100.0000
54.8387
28312800
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7968
99.7563
99.8374
54.8306
1473436147362417
70.8333
ciseli-customINDELD6_15HG002complexvarhomalt
60.1083
92.0445
44.6250
54.8278
107693107113291061
79.8345
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
79.6299
72.3065
88.6040
54.8263
953365933120112
93.3333
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8950
99.8510
99.9390
54.8240
14748221475094
44.4444
bgallagher-sentieonINDELD6_15**
98.0100
97.7771
98.2439
54.8211
2551258025511456416
91.2281
mlin-fermikitSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.8660
97.7360
97.9964
54.8200
2732663327341559392
70.1252
ckim-vqsrINDEL*tech_badpromoters*
99.3377
98.6842
100.0000
54.8193
7517500
ckim-gatkINDEL*tech_badpromoters*
99.3377
98.6842
100.0000
54.8193
7517500
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
44.3050
88.6576
29.5314
54.8186
85210985720452032
99.3643
gduggal-bwafbINDELI1_5HG002complexvarhet
97.6126
96.2835
98.9789
54.8150
1751367618224188155
82.4468
jlack-gatkINDELD6_15**
96.4774
96.4127
96.5422
54.8116
2515693625156901581
64.4839
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.5833
99.3763
99.7912
54.8113
478347810
0.0000
ndellapenna-hhgaINDELD1_5HG002complexvar*
97.3122
96.7874
97.8426
54.8110
31664105131656698573
82.0917
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.7824
99.8573
95.7920
54.8083
280042800123122
99.1870
cchapple-customINDELI6_15HG002complexvar*
97.5496
96.4942
98.6284
54.8042
462416847466660
90.9091
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.4090
99.1601
99.6591
54.8028
25146213251448660
69.7674
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.7654
99.8573
95.7592
54.7998
280042800124123
99.1935
astatham-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5168
99.0808
99.9567
54.7993
2770225727701125
41.6667
gduggal-bwaplatINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
84.6154
73.3333
100.0000
54.7945
33123300
hfeng-pmm2INDEL*tech_badpromotershomalt
100.0000
100.0000
100.0000
54.7945
3303300
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
98.9834
98.4772
99.4949
54.7945
194319711
100.0000
jli-customINDELD1_5HG002complexvarhet
99.7322
99.5618
99.9033
54.7904
206749120667206
30.0000
cchapple-customINDELD1_5*het
99.5112
99.3229
99.7003
54.7900
8698159397146292149
51.0274
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
54.4494
95.7490
38.0411
54.7898
4257189428069716935
99.4836
qzeng-customINDELD6_15HG002complexvarhet
94.9295
96.7628
93.1643
54.7892
30191014116302103
34.1060
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0352
98.3306
99.7499
54.7881
1755329817552444
9.0909
qzeng-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
98.9022
99.1118
98.6934
54.7879
280092515113767794
13.8848
dgrover-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.0434
93.0771
95.0299
54.7829
36572723652191179
93.7173
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
60.9265
84.9007
47.5105
54.7800
975017349733107539871
91.7976
ckim-vqsrSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.3474
98.7681
99.9335
54.7798
601375601344
100.0000
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
79.1674
71.9397
88.0095
54.7793
19107451857253201
79.4466
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
75.5526
81.0392
70.7618
54.7757
5599131042451754345
19.6693
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.0315
98.4878
97.5794
54.7750
65781016571163149
91.4110
gduggal-bwavardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
43.5112
89.2820
28.7648
54.7750
85810385021052053
97.5297
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.4149
99.8046
95.1369
54.7737
5107105106261260
99.6169
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.7883
91.0957
96.6448
54.7687
3550347354312390
73.1707
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
75.7234
65.8935
89.0004
54.7661
230111912306285284
99.6491
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
32.6056
25.2495
46.0100
54.7659
253749369433324
74.8268
ckim-dragenSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.7964
99.8426
99.7503
54.7629
2791544279637023
32.8571
qzeng-customINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
75.6710
62.0959
96.8421
54.7619
5573409232
66.6667
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
95.0000
90.4762
100.0000
54.7619
1921900
gduggal-bwavardINDEL*tech_badpromotershomalt
75.4717
60.6061
100.0000
54.7619
20131900
ltrigg-rtg1SNPtvtech_badpromotershomalt
98.7013
97.4359
100.0000
54.7619
3813800
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.6621
99.8310
99.4938
54.7565
295452948151
6.6667
gduggal-snapvardINDELD1_5HG002compoundhethomalt
75.8563
69.7595
83.1210
54.7550
203882615349
92.4528
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.6997
99.7269
99.6725
54.7543
18265182661
16.6667
anovak-vgINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
28.1418
19.8381
48.4018
54.7521
4919810611390
79.6460