PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56201-56250 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 79.8362 | 74.7126 | 85.7143 | 54.9550 | 845 | 286 | 600 | 100 | 84 | 84.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.4326 | 94.7547 | 72.9465 | 54.9486 | 1120 | 62 | 1119 | 415 | 412 | 99.2771 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9754 | 99.9671 | 99.9836 | 54.9478 | 6086 | 2 | 6086 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 80.0445 | 73.9527 | 87.2300 | 54.9427 | 1783 | 628 | 1817 | 266 | 219 | 82.3308 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8000 | 99.6479 | 99.9525 | 54.9426 | 14718 | 52 | 14720 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | * | 96.4189 | 94.4813 | 98.4377 | 54.9407 | 72692 | 4246 | 74289 | 1179 | 1015 | 86.0899 | |
| ckim-vqsr | INDEL | I16_PLUS | * | hetalt | 95.6650 | 91.9924 | 99.6430 | 54.9403 | 1930 | 168 | 1954 | 7 | 6 | 85.7143 | |
| ciseli-custom | INDEL | D16_PLUS | * | het | 73.2078 | 63.1529 | 87.0708 | 54.9379 | 1995 | 1164 | 2054 | 305 | 262 | 85.9016 | |
| egarrison-hhga | INDEL | D1_5 | * | het | 97.6225 | 99.3251 | 95.9773 | 54.9367 | 86983 | 591 | 87418 | 3664 | 3399 | 92.7675 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.5008 | 99.2225 | 67.7227 | 54.9332 | 8295 | 65 | 8615 | 4106 | 4035 | 98.2708 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 80.5008 | 99.2225 | 67.7227 | 54.9332 | 8295 | 65 | 8615 | 4106 | 4035 | 98.2708 | |
| ckim-vqsr | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | tech_badpromoters | homalt | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||
| jli-custom | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-gatk | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | homalt | 98.6971 | 99.8353 | 97.5845 | 54.9183 | 1212 | 2 | 1212 | 30 | 30 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | * | hetalt | 95.7167 | 92.0877 | 99.6434 | 54.9150 | 1932 | 166 | 1956 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | * | * | homalt | 98.8395 | 98.9790 | 98.7005 | 54.9139 | 123894 | 1278 | 123877 | 1631 | 1021 | 62.5996 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.5778 | 91.1697 | 96.1165 | 54.9134 | 14630 | 1417 | 15642 | 632 | 605 | 95.7278 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.5638 | 88.7324 | 80.7692 | 54.9133 | 63 | 8 | 63 | 15 | 15 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | * | homalt | 97.7332 | 99.8557 | 95.6989 | 54.9107 | 6230 | 9 | 6230 | 280 | 278 | 99.2857 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6954 | 99.5943 | 99.7967 | 54.9038 | 491 | 2 | 491 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | HG002compoundhet | het | 52.7411 | 50.6595 | 55.0010 | 54.9014 | 2074 | 2020 | 13874 | 11351 | 7959 | 70.1172 | |
| ltrigg-rtg2 | INDEL | * | HG002complexvar | * | 98.9919 | 98.4780 | 99.5112 | 54.8986 | 75766 | 1171 | 75523 | 371 | 227 | 61.1860 | |
| ckim-vqsr | INDEL | I6_15 | * | homalt | 97.7408 | 99.8557 | 95.7136 | 54.8957 | 6230 | 9 | 6230 | 279 | 277 | 99.2832 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.3372 | 96.2662 | 98.4323 | 54.8939 | 1186 | 46 | 1193 | 19 | 10 | 52.6316 | |
| ckim-gatk | INDEL | I6_15 | * | homalt | 97.7332 | 99.8557 | 95.6989 | 54.8919 | 6230 | 9 | 6230 | 280 | 278 | 99.2857 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 85.9460 | 91.8919 | 80.7229 | 54.8913 | 34 | 3 | 134 | 32 | 8 | 25.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1505 | 98.3978 | 99.9147 | 54.8907 | 17565 | 286 | 17565 | 15 | 4 | 26.6667 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9638 | 97.4619 | 98.4709 | 54.8834 | 31180 | 812 | 31104 | 483 | 468 | 96.8944 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6839 | 99.4502 | 99.9188 | 54.8820 | 6150 | 34 | 6150 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.8582 | 76.3275 | 79.4516 | 54.8804 | 4643 | 1440 | 6519 | 1686 | 1004 | 59.5492 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.6837 | 99.7394 | 99.6281 | 54.8750 | 2679 | 7 | 2679 | 10 | 2 | 20.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7040 | 99.5496 | 99.8589 | 54.8699 | 16355 | 74 | 16278 | 23 | 8 | 34.7826 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.1659 | 98.5874 | 99.7512 | 54.8686 | 6002 | 86 | 6015 | 15 | 3 | 20.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.7832 | 99.8930 | 95.7607 | 54.8681 | 2801 | 3 | 2801 | 124 | 124 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 81.7820 | 89.5719 | 75.2387 | 54.8652 | 2448 | 285 | 2443 | 804 | 793 | 98.6318 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4741 | 99.3855 | 99.5628 | 54.8644 | 6146 | 38 | 6148 | 27 | 9 | 33.3333 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | het | 97.5444 | 95.3569 | 99.8346 | 54.8630 | 12076 | 588 | 12074 | 20 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9984 | 94.8103 | 99.2899 | 54.8611 | 1699 | 93 | 1678 | 12 | 9 | 75.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.8288 | 96.4491 | 97.2114 | 54.8569 | 14260 | 525 | 14258 | 409 | 404 | 98.7775 | |
| anovak-vg | INDEL | D1_5 | HG002complexvar | * | 91.1523 | 90.0107 | 92.3232 | 54.8532 | 29447 | 3268 | 29789 | 2477 | 1674 | 67.5818 | |
| ltrigg-rtg1 | INDEL | I1_5 | * | het | 99.3128 | 98.9158 | 99.7130 | 54.8506 | 78184 | 857 | 77471 | 223 | 56 | 25.1121 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 74.7337 | 62.6214 | 92.6554 | 54.8469 | 129 | 77 | 164 | 13 | 12 | 92.3077 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.6996 | 85.4251 | 85.9760 | 54.8462 | 633 | 108 | 1502 | 245 | 198 | 80.8163 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 69.0921 | 61.2589 | 79.2222 | 54.8419 | 944 | 597 | 1426 | 374 | 353 | 94.3850 | |
| hfeng-pmm1 | INDEL | D6_15 | tech_badpromoters | * | 90.3226 | 82.3529 | 100.0000 | 54.8387 | 14 | 3 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 54.8387 | 28 | 1 | 28 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | tech_badpromoters | * | 78.7330 | 75.0000 | 82.8571 | 54.8387 | 57 | 19 | 58 | 12 | 2 | 16.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | tech_badpromoters | * | 90.3226 | 82.3529 | 100.0000 | 54.8387 | 14 | 3 | 14 | 0 | 0 | ||