PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56101-56150 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D6_15 | * | * | 98.3523 | 98.1412 | 98.5642 | 55.1444 | 25607 | 485 | 25606 | 373 | 340 | 91.1528 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8513 | 99.7206 | 99.9825 | 55.1444 | 17129 | 48 | 17126 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.9226 | 99.8834 | 90.4311 | 55.1415 | 857 | 1 | 860 | 91 | 16 | 17.5824 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1254 | 97.6900 | 98.5646 | 55.1368 | 31253 | 739 | 31175 | 454 | 437 | 96.2555 | |
| qzeng-custom | INDEL | I1_5 | HG002complexvar | het | 98.6121 | 98.1362 | 99.0926 | 55.1360 | 17850 | 339 | 18675 | 171 | 70 | 40.9357 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 68.7152 | 52.6555 | 98.8701 | 55.1331 | 347 | 312 | 350 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 68.7152 | 52.6555 | 98.8701 | 55.1331 | 347 | 312 | 350 | 4 | 4 | 100.0000 | |
| dgrover-gatk | SNP | ti | map_siren | * | 99.6765 | 99.6403 | 99.7128 | 55.1320 | 99994 | 361 | 99979 | 288 | 68 | 23.6111 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.6495 | 99.7661 | 99.5333 | 55.1309 | 853 | 2 | 853 | 4 | 1 | 25.0000 | |
| mlin-fermikit | INDEL | * | HG002complexvar | homalt | 95.7600 | 96.3222 | 95.2043 | 55.1307 | 26033 | 994 | 25927 | 1306 | 1267 | 97.0138 | |
| ltrigg-rtg1 | INDEL | * | * | het | 99.1142 | 98.5886 | 99.6455 | 55.1307 | 191393 | 2740 | 190584 | 678 | 162 | 23.8938 | |
| gduggal-snapfb | INDEL | * | * | het | 92.8434 | 92.0858 | 93.6136 | 55.1298 | 178769 | 15364 | 200114 | 13652 | 5023 | 36.7931 | |
| raldana-dualsentieon | SNP | ti | map_siren | het | 99.3661 | 99.3941 | 99.3382 | 55.1273 | 62004 | 378 | 61995 | 413 | 8 | 1.9371 | |
| astatham-gatk | INDEL | I1_5 | * | homalt | 99.7125 | 99.8544 | 99.5710 | 55.1217 | 60340 | 88 | 60345 | 260 | 257 | 98.8462 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1527 | 97.7494 | 98.5592 | 55.1204 | 31272 | 720 | 31194 | 456 | 439 | 96.2719 | |
| egarrison-hhga | INDEL | I1_5 | HG002complexvar | het | 98.9830 | 98.5431 | 99.4269 | 55.1160 | 17924 | 265 | 17869 | 103 | 26 | 25.2427 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 85.7428 | 78.4150 | 94.5813 | 55.1133 | 752 | 207 | 768 | 44 | 43 | 97.7273 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8303 | 99.7319 | 99.9289 | 55.1102 | 25291 | 68 | 25294 | 18 | 12 | 66.6667 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 45.8754 | 35.9281 | 63.4398 | 55.1086 | 360 | 642 | 616 | 355 | 312 | 87.8873 | |
| ckim-dragen | INDEL | I6_15 | HG002complexvar | homalt | 97.8586 | 99.7529 | 96.0349 | 55.1086 | 1211 | 3 | 1211 | 50 | 50 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 77.3354 | 79.2618 | 75.5004 | 55.1018 | 2985 | 781 | 2980 | 967 | 964 | 99.6898 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 77.3354 | 79.2618 | 75.5004 | 55.1018 | 2985 | 781 | 2980 | 967 | 964 | 99.6898 | |
| ndellapenna-hhga | SNP | tv | map_siren | het | 99.3169 | 98.8465 | 99.7918 | 55.1017 | 28279 | 330 | 28279 | 59 | 19 | 32.2034 | |
| astatham-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 55.0898 | 75 | 1 | 75 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 55.0898 | 75 | 1 | 75 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | HG002complexvar | * | 96.2019 | 94.8456 | 97.5976 | 55.0867 | 4545 | 247 | 4550 | 112 | 73 | 65.1786 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.2716 | 99.9044 | 96.6913 | 55.0844 | 8358 | 8 | 8358 | 286 | 283 | 98.9510 | |
| ghariani-varprowl | SNP | * | HG002compoundhet | * | 85.5640 | 92.8588 | 79.3318 | 55.0838 | 23978 | 1844 | 24220 | 6310 | 2033 | 32.2187 | |
| jli-custom | SNP | tv | map_siren | * | 99.6133 | 99.5493 | 99.6773 | 55.0835 | 45723 | 207 | 45718 | 148 | 36 | 24.3243 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 87.6651 | 82.3219 | 93.7500 | 55.0802 | 312 | 67 | 315 | 21 | 21 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | * | homalt | 99.5606 | 99.5449 | 99.5763 | 55.0778 | 60153 | 275 | 60163 | 256 | 247 | 96.4844 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.6865 | 93.7182 | 91.6773 | 55.0764 | 23766 | 1593 | 23694 | 2151 | 1318 | 61.2738 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8087 | 99.7595 | 99.8579 | 55.0764 | 25298 | 61 | 25300 | 36 | 29 | 80.5556 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 27.1461 | 25.0340 | 29.6474 | 55.0756 | 184 | 551 | 185 | 439 | 435 | 99.0888 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 75.3247 | 63.0435 | 93.5484 | 55.0725 | 29 | 17 | 29 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2142 | 97.3128 | 99.1325 | 55.0694 | 30564 | 844 | 30624 | 268 | 105 | 39.1791 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.2142 | 97.3128 | 99.1325 | 55.0694 | 30564 | 844 | 30624 | 268 | 105 | 39.1791 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 55.0270 | 47.1042 | 66.1538 | 55.0691 | 122 | 137 | 129 | 66 | 54 | 81.8182 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8455 | 99.7089 | 99.9825 | 55.0685 | 17127 | 50 | 17124 | 3 | 2 | 66.6667 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9145 | 97.8347 | 97.9944 | 55.0665 | 4202 | 93 | 4202 | 86 | 37 | 43.0233 | |
| eyeh-varpipe | INDEL | * | HG002compoundhet | homalt | 7.7309 | 93.0029 | 4.0330 | 55.0612 | 638 | 48 | 576 | 13706 | 13667 | 99.7155 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.3294 | 95.6482 | 97.0203 | 55.0608 | 16902 | 769 | 16899 | 519 | 497 | 95.7611 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.3294 | 95.6482 | 97.0203 | 55.0608 | 16902 | 769 | 16899 | 519 | 497 | 95.7611 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8463 | 99.7898 | 99.9029 | 55.0600 | 6171 | 13 | 6171 | 6 | 1 | 16.6667 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.4133 | 98.4093 | 98.4173 | 55.0598 | 1361 | 22 | 1368 | 22 | 17 | 77.2727 | |
| hfeng-pmm1 | INDEL | I6_15 | HG002complexvar | homalt | 98.6168 | 99.8353 | 97.4277 | 55.0578 | 1212 | 2 | 1212 | 32 | 32 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | het | 97.6557 | 95.5343 | 99.8735 | 55.0552 | 7894 | 369 | 7894 | 10 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.7892 | 84.1909 | 93.9189 | 55.0542 | 2258 | 424 | 973 | 63 | 62 | 98.4127 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.4077 | 96.8613 | 95.9584 | 55.0491 | 27373 | 887 | 54846 | 2310 | 1901 | 82.2944 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 77.0749 | 65.9030 | 92.8079 | 55.0487 | 489 | 253 | 942 | 73 | 69 | 94.5205 | |