PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55901-55950 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 34.6434 | 31.9820 | 37.7880 | 55.5328 | 71 | 151 | 82 | 135 | 123 | 91.1111 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | hetalt | 93.3550 | 91.2142 | 95.5988 | 55.5303 | 924 | 89 | 934 | 43 | 43 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7378 | 99.5218 | 99.9547 | 55.5264 | 11031 | 53 | 11028 | 5 | 1 | 20.0000 | |
| astatham-gatk | INDEL | I6_15 | HG002complexvar | homalt | 98.5378 | 99.9176 | 97.1955 | 55.5239 | 1213 | 1 | 1213 | 35 | 35 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | HG002complexvar | het | 79.6121 | 75.4140 | 84.3052 | 55.5219 | 1776 | 579 | 1735 | 323 | 120 | 37.1517 | |
| rpoplin-dv42 | INDEL | * | HG002complexvar | homalt | 99.6016 | 99.4265 | 99.7773 | 55.5190 | 26872 | 155 | 26879 | 60 | 53 | 88.3333 | |
| mlin-fermikit | INDEL | D6_15 | HG002complexvar | het | 92.4085 | 90.4808 | 94.4202 | 55.5173 | 2823 | 297 | 2809 | 166 | 152 | 91.5663 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 52.9926 | 40.3952 | 77.0079 | 55.5166 | 1104 | 1629 | 978 | 292 | 97 | 33.2192 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9376 | 96.2573 | 97.6275 | 55.5145 | 823 | 32 | 823 | 20 | 1 | 5.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | HG002complexvar | het | 99.5249 | 99.3402 | 99.7103 | 55.5097 | 20628 | 137 | 20652 | 60 | 48 | 80.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.7864 | 97.0356 | 87.0760 | 55.5089 | 8118 | 248 | 8112 | 1204 | 1184 | 98.3389 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 88.1439 | 79.2105 | 99.3485 | 55.5072 | 301 | 79 | 305 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8383 | 99.8028 | 99.8737 | 55.5058 | 25309 | 50 | 25307 | 32 | 17 | 53.1250 | |
| mlin-fermikit | SNP | ti | map_l100_m0_e0 | het | 57.7466 | 40.8496 | 98.4828 | 55.5044 | 5712 | 8271 | 5712 | 88 | 4 | 4.5455 | |
| astatham-gatk | INDEL | D6_15 | * | homalt | 98.8889 | 99.8893 | 97.9083 | 55.4989 | 6319 | 7 | 6319 | 135 | 133 | 98.5185 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | het | 98.6823 | 98.3530 | 99.0138 | 55.4973 | 20423 | 342 | 21686 | 216 | 103 | 47.6852 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 55.0422 | 49.2827 | 62.3260 | 55.4966 | 1168 | 1202 | 1254 | 758 | 535 | 70.5805 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.9766 | 17.5155 | 20.7036 | 55.4928 | 368 | 1733 | 359 | 1375 | 1359 | 98.8364 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002complexvar | het | 95.7312 | 92.5926 | 99.0900 | 55.4905 | 1025 | 82 | 980 | 9 | 3 | 33.3333 | |
| ltrigg-rtg1 | SNP | * | map_l100_m0_e0 | het | 98.4261 | 97.1705 | 99.7145 | 55.4883 | 20605 | 600 | 20610 | 59 | 8 | 13.5593 | |
| raldana-dualsentieon | INDEL | I6_15 | * | het | 98.4817 | 97.7076 | 99.2683 | 55.4872 | 9803 | 230 | 9768 | 72 | 56 | 77.7778 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9804 | 98.5801 | 99.3840 | 55.4845 | 486 | 7 | 484 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | * | het | 77.1133 | 84.3154 | 71.0447 | 55.4839 | 9773 | 1818 | 10153 | 4138 | 1402 | 33.8811 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 86.2084 | 80.6245 | 92.6232 | 55.4837 | 3279 | 788 | 3252 | 259 | 195 | 75.2896 | |
| gduggal-snapfb | INDEL | I1_5 | HG002complexvar | * | 93.5109 | 94.6378 | 92.4106 | 55.4813 | 31574 | 1789 | 31902 | 2620 | 888 | 33.8931 | |
| ciseli-custom | INDEL | * | HG002compoundhet | homalt | 5.5419 | 79.0087 | 2.8717 | 55.4798 | 542 | 144 | 559 | 18907 | 17855 | 94.4359 | |
| jmaeng-gatk | INDEL | I16_PLUS | * | hetalt | 95.5588 | 91.7541 | 99.6928 | 55.4720 | 1925 | 173 | 1947 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 49.8333 | 42.9384 | 59.3660 | 55.4700 | 830 | 1103 | 824 | 564 | 402 | 71.2766 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.0133 | 98.1991 | 99.8412 | 55.4691 | 3817 | 70 | 3772 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9169 | 92.6686 | 99.4012 | 55.4667 | 316 | 25 | 332 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5409 | 99.1719 | 99.9126 | 55.4663 | 25149 | 210 | 25156 | 22 | 13 | 59.0909 | |
| dgrover-gatk | INDEL | I1_5 | * | homalt | 99.7224 | 99.8577 | 99.5874 | 55.4630 | 60342 | 86 | 60347 | 250 | 246 | 98.4000 | |
| cchapple-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7125 | 99.6183 | 99.8069 | 55.4600 | 522 | 2 | 517 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 80.2639 | 78.0371 | 82.6214 | 55.4597 | 3109 | 875 | 3114 | 655 | 601 | 91.7557 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | hetalt | 94.2306 | 89.1325 | 99.9472 | 55.4588 | 1870 | 228 | 1892 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 26.2279 | 23.2884 | 30.0166 | 55.4521 | 915 | 3014 | 905 | 2110 | 2058 | 97.5355 | |
| asubramanian-gatk | INDEL | D6_15 | * | * | 97.6552 | 97.1179 | 98.1984 | 55.4499 | 25340 | 752 | 25346 | 465 | 420 | 90.3226 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 82.5353 | 76.8626 | 89.1121 | 55.4494 | 3126 | 941 | 3282 | 401 | 398 | 99.2519 | |
| qzeng-custom | SNP | tv | * | hetalt | 98.2537 | 97.2445 | 99.2840 | 55.4492 | 847 | 24 | 832 | 6 | 5 | 83.3333 | |
| qzeng-custom | SNP | * | * | hetalt | 98.2537 | 97.2445 | 99.2840 | 55.4492 | 847 | 24 | 832 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | * | het | 99.5580 | 99.2715 | 99.8461 | 55.4481 | 86936 | 638 | 86940 | 134 | 51 | 38.0597 | |
| gduggal-bwavard | INDEL | * | HG002complexvar | * | 90.6853 | 90.5690 | 90.8018 | 55.4471 | 69682 | 7256 | 68628 | 6952 | 5563 | 80.0201 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 39.7351 | 28.3019 | 66.6667 | 55.4455 | 15 | 38 | 30 | 15 | 15 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.9522 | 71.7391 | 87.7778 | 55.4455 | 66 | 26 | 79 | 11 | 10 | 90.9091 | |
| anovak-vg | INDEL | D1_5 | * | het | 92.1131 | 94.4127 | 89.9228 | 55.4448 | 82681 | 4893 | 86771 | 9724 | 6623 | 68.1098 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2646 | 97.5659 | 98.9733 | 55.4437 | 481 | 12 | 482 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 86.6885 | 80.3324 | 94.1368 | 55.4427 | 290 | 71 | 289 | 18 | 5 | 27.7778 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7960 | 99.6973 | 99.8950 | 55.4424 | 17125 | 52 | 17126 | 18 | 14 | 77.7778 | |
| hfeng-pmm1 | INDEL | * | * | homalt | 99.6836 | 99.7787 | 99.5886 | 55.4406 | 124895 | 277 | 124903 | 516 | 501 | 97.0930 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 63.3990 | 50.8728 | 84.1085 | 55.4404 | 204 | 197 | 217 | 41 | 32 | 78.0488 | |