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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1109 1110 1111 1112 1113 1114 1115 1116 1117 ... 1720 1721 » 55601-55650 / 86044 show all
ckim-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6801	99.7532	99.6071	56.0538	27890	69	27889	110	11	10.0000
ciseli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	39.4599	40.5405	38.4354	56.0538	60	88	113	181	161	88.9503
ckim-dragen	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8935	99.8416	99.9455	56.0535	20167	32	20178	11	11	100.0000
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	90.3594	93.8224	87.1429	56.0440	243	16	244	36	30	83.3333
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	96.3415	92.9412	100.0000	56.0440	79	6	80	0	0
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7416	99.8545	99.6289	56.0363	6175	9	6175	23	2	8.6957
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.4678	96.9896	97.9508	56.0360	36761	1141	36567	765	735	96.0784
ckim-isaac	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	81.7248	70.3180	97.5490	56.0345	199	84	199	5	5	100.0000
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.0450	93.0070	99.2883	56.0250	266	20	279	2	2	100.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.8070	98.1869	99.4350	56.0248	704	13	704	4	3	75.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.0155	99.8736	96.2253	56.0241	3161	4	3161	124	122	98.3871
hfeng-pmm1	SNP	tv	map_siren	homalt	99.8956	99.8898	99.9014	56.0205	17221	19	17219	17	8	47.0588
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.0003	99.8736	96.1960	56.0166	3161	4	3161	125	123	98.4000
gduggal-bwaplat	SNP	ti	*	hetalt	95.4648	92.2680	98.8909	56.0163	537	45	535	6	6	100.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.9615	90.9091	99.3921	56.0160	310	31	327	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.9615	90.9091	99.3921	56.0160	310	31	327	2	2	100.0000
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.4995	98.0432	98.9602	56.0148	27707	553	27695	291	283	97.2509
astatham-gatk	INDEL	I6_15	HG002complexvar	hetalt	97.3132	94.7670	100.0000	56.0117	1159	64	1200	0	0
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5721	99.2498	99.8965	56.0085	28048	212	27998	29	16	55.1724
gduggal-bwaplat	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	81.6911	69.4493	99.1722	56.0007	2396	1054	2396	20	5	25.0000
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.9097	99.8737	99.9458	56.0006	11070	14	11066	6	5	83.3333
ndellapenna-hhga	INDEL	I1_5	tech_badpromoters	*	100.0000	100.0000	100.0000	56.0000	22	0	22	0	0
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	86.6039	84.2520	89.0909	56.0000	107	20	98	12	8	66.6667
egarrison-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	85.7143	75.0000	100.0000	56.0000	21	7	22	0	0
ciseli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	26.6490	16.9856	61.8182	56.0000	71	347	68	42	32	76.1905
ckim-dragen	INDEL	I1_5	tech_badpromoters	*	100.0000	100.0000	100.0000	56.0000	22	0	22	0	0
raldana-dualsentieon	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9455	99.9307	99.9604	55.9950	20185	14	20185	8	8	100.0000
gduggal-bwavard	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.4626	97.0981	99.8660	55.9944	9804	293	9692	13	8	61.5385
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	96.9087	96.8629	96.9546	55.9921	5990	194	6049	190	95	50.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	71.9457	56.1837	100.0000	55.9889	159	124	158	0	0
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6460	99.6990	99.5931	55.9882	11262	34	11258	46	37	80.4348
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	46.1155	32.1540	81.5062	55.9877	2690	5676	2684	609	538	88.3415
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9292	99.9557	99.9027	55.9852	11291	5	11292	11	11	100.0000
ckim-vqsr	SNP	tv	HG002compoundhet	het	99.1184	98.6518	99.5894	55.9836	4610	63	4608	19	12	63.1579
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.7239	97.5877	99.8869	55.9761	890	22	883	1	1	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.4735	88.5110	99.0255	55.9755	2134	277	2134	21	19	90.4762
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2066	99.0882	99.3253	55.9755	11193	103	11189	76	58	76.3158
rpoplin-dv42	SNP	tv	map_siren	homalt	99.7328	99.5998	99.8662	55.9755	17171	69	17169	23	21	91.3043
ckim-isaac	INDEL	I1_5	HG002complexvar	hetalt	81.8382	73.1170	92.9216	55.9731	1262	464	1339	102	87	85.2941
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	92.5242	92.9345	92.1175	55.9701	12785	972	12446	1065	828	77.7465
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	92.5242	92.9345	92.1175	55.9701	12785	972	12446	1065	828	77.7465
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.4025	98.8681	99.9427	55.9677	1747	20	1744	1	0	0.0000
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	94.7137	90.5594	99.2674	55.9677	259	27	271	2	1	50.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3719	99.3026	99.4413	55.9656	712	5	712	4	3	75.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9159	99.9292	99.9026	55.9613	11288	8	11288	11	10	90.9091
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	25.2937	22.4179	29.0158	55.9542	471	1630	513	1255	1101	87.7291
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4669	99.6693	99.2653	55.9536	3918	13	3918	29	0	0.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.0554	100.0000	96.1851	55.9528	2370	0	2370	94	93	98.9362
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	77.8604	71.7514	85.1064	55.9513	254	100	400	70	67	95.7143
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.2376	96.9527	97.5243	55.9478	36747	1155	36556	928	901	97.0905

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