PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1108 1109 1110 1111 1112 1113 1114 1115 1116 ... 1720 1721 » 55551-55600 / 86044 show all
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	91.3518	88.3601	94.5531	56.1456	1708	225	1788	103	103	100.0000
hfeng-pmm2	SNP	*	map_siren	*	99.6789	99.6758	99.6819	56.1450	145754	474	145731	465	62	13.3333
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	57.8916	83.4278	44.3245	56.1428	14866	2953	14940	18766	18665	99.4618
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	*	96.0000	96.0000	96.0000	56.1404	24	1	24	1	0	0.0000
jmaeng-gatk	SNP	tv	HG002compoundhet	het	99.2149	98.7160	99.7189	56.1374	4613	60	4611	13	11	84.6154
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8937	99.8584	99.9291	56.1359	11280	16	11280	8	7	87.5000
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2661	99.8221	98.7161	56.1302	6173	11	6305	82	1	1.2195
hfeng-pmm2	INDEL	*	HG002complexvar	homalt	99.7542	99.8483	99.6603	56.1296	26986	41	26994	92	86	93.4783
ltrigg-rtg2	INDEL	*	*	*	99.2539	98.8759	99.6347	56.1284	340668	3873	340411	1248	516	41.3462
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.2635	100.0000	96.5863	56.1233	481	0	481	17	13	76.4706
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	50.0731	34.1014	94.1860	56.1224	74	143	81	5	5	100.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	56.1224	343	0	343	1	0	0.0000
astatham-gatk	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	56.1224	43	0	43	0	0
jpowers-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	87.0329	82.8169	91.7012	56.1220	882	183	884	80	65	81.2500
hfeng-pmm2	SNP	tv	map_siren	homalt	99.9014	99.9014	99.9014	56.1199	17223	17	17220	17	9	52.9412
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.0159	93.8240	98.3126	56.1185	1109	73	1107	19	18	94.7368
eyeh-varpipe	INDEL	D6_15	*	hetalt	46.3037	30.5358	95.7427	56.1168	2496	5678	3036	135	128	94.8148
hfeng-pmm3	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9257	99.8911	99.9604	56.1148	20177	22	20177	8	7	87.5000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0742	96.5582	99.6386	56.1134	30327	1081	30328	110	94	85.4545
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0742	96.5582	99.6386	56.1134	30327	1081	30328	110	94	85.4545
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2342	98.9813	99.4883	56.1128	1749	18	1750	9	6	66.6667
jli-custom	INDEL	*	HG002complexvar	het	99.4410	99.0457	99.8394	56.1111	45771	441	45384	73	32	43.8356
cchapple-custom	SNP	*	tech_badpromoters	het	97.4359	98.7013	96.2025	56.1111	76	1	76	3	0	0.0000
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6790	99.4763	99.8825	56.1108	28112	148	28064	33	18	54.5455
hfeng-pmm2	SNP	ti	map_siren	het	99.5502	99.5223	99.5781	56.1068	62084	298	62075	263	19	7.2243
ltrigg-rtg2	INDEL	*	*	het	99.3348	99.1568	99.5135	56.1055	192496	1637	191657	937	230	24.5464
raldana-dualsentieon	INDEL	I1_5	HG002complexvar	*	99.3540	98.8640	99.8488	56.1047	32984	379	33026	50	41	82.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.2279	99.3671	97.1146	56.0984	2355	15	2356	70	66	94.2857
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	*	34.4471	27.4775	46.1538	56.0976	61	161	108	126	89	70.6349
jmaeng-gatk	INDEL	I1_5	HG002compoundhet	hetalt	95.4604	91.3394	99.9708	56.0929	10209	968	10266	3	3	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	*	*	96.9914	94.9292	99.1450	56.0917	6440	344	6378	55	35	63.6364
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.1914	99.7899	96.6433	56.0900	9501	20	9501	330	327	99.0909
ltrigg-rtg2	INDEL	I1_5	*	het	99.5106	99.4497	99.5716	56.0879	78606	435	77868	335	92	27.4627
ltrigg-rtg1	INDEL	D6_15	HG002compoundhet	het	96.8725	96.2617	97.4910	56.0860	824	32	816	21	15	71.4286
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	60.5212	53.0761	70.3956	56.0815	509	450	516	217	206	94.9309
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8805	99.8672	99.8937	56.0776	11281	15	11280	12	12	100.0000
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	87.0370	77.0492	100.0000	56.0748	47	14	47	0	0
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	87.0370	77.0492	100.0000	56.0748	47	14	47	0	0
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	70.3371	62.5265	80.3777	56.0717	15344	9196	18388	4489	2592	57.7411
gduggal-snapplat	INDEL	I6_15	HG002compoundhet	homalt	4.7937	25.8065	2.6423	56.0714	8	23	13	479	433	90.3967
bgallagher-sentieon	INDEL	D1_5	HG002complexvar	het	99.8096	99.7111	99.9084	56.0707	20705	60	20713	19	12	63.1579
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	73.6043	64.1917	86.2515	56.0661	1366	762	1468	234	231	98.7179
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.3724	94.0724	98.7877	56.0658	3666	231	3667	45	39	86.6667
jmaeng-gatk	INDEL	D6_15	func_cds	het	100.0000	100.0000	100.0000	56.0606	29	0	29	0	0
ltrigg-rtg2	INDEL	D6_15	HG002compoundhet	homalt	84.6862	95.8333	75.8621	56.0606	23	1	22	7	7	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.3386	84.0580	100.0000	56.0606	58	11	58	0	0
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7253	99.7898	99.6609	56.0602	6171	13	6171	21	2	9.5238
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.4429	96.9236	97.9678	56.0572	36736	1166	36542	758	728	96.0422
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.0161	99.9052	96.1971	56.0561	3162	3	3162	125	124	99.2000
ltrigg-rtg1	INDEL	*	*	*	99.0160	98.3355	99.7061	56.0561	338806	5735	338554	998	454	45.4910

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge