PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1107 1108 1109 1110 1111 1112 1113 1114 1115 ... 1720 1721 » 55501-55550 / 86044 show all
hfeng-pmm1	SNP	tv	map_siren	*	99.7188	99.5885	99.8494	56.2301	45741	189	45734	69	22	31.8841
hfeng-pmm3	INDEL	I6_15	*	het	98.8597	98.1362	99.5939	56.2294	9846	187	9811	40	29	72.5000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8578	99.8307	99.8849	56.2250	14745	25	14747	17	4	23.5294
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	95.1518	97.8124	92.6322	56.2191	10865	243	11001	875	754	86.1714
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	81.2534	85.2901	77.5815	56.2165	632	109	571	165	144	87.2727
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.9052	99.8917	99.9188	56.2157	11072	12	11068	9	4	44.4444
gduggal-snapplat	SNP	*	HG002compoundhet	*	83.9950	90.1789	78.6048	56.2142	23286	2536	23381	6364	715	11.2351
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	70.4679	70.6667	70.2703	56.2130	53	22	52	22	19	86.3636
ckim-dragen	SNP	ti	map_l100_m0_e0	homalt	99.4968	99.1896	99.8059	56.2121	7711	63	7714	15	14	93.3333
ltrigg-rtg2	SNP	*	map_l100_m2_e1	*	99.2263	98.6673	99.7916	56.2116	73741	996	73738	154	24	15.5844
ciseli-custom	SNP	tv	map_siren	homalt	92.1923	91.6589	92.7320	56.2107	15802	1438	15770	1236	874	70.7120
gduggal-snapfb	SNP	tv	HG002compoundhet	het	69.0686	96.5761	53.7572	56.2100	4513	160	4600	3957	124	3.1337
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	85.4267	79.7078	92.0297	56.2094	982	250	993	86	52	60.4651
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	29.4118	42.8571	22.3881	56.2092	15	20	15	52	24	46.1538
qzeng-custom	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	het	62.9921	66.6667	59.7015	56.2092	6	3	40	27	24	88.8889
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7701	99.9578	97.6102	56.2071	2369	1	2369	58	57	98.2759
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7701	99.9578	97.6102	56.2071	2369	1	2369	58	57	98.2759
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4473	99.1113	99.7856	56.2027	16283	146	16290	35	23	65.7143
gduggal-bwaplat	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	93.3264	87.6955	99.7299	56.2023	8859	1243	8863	24	19	79.1667
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	82.5092	75.5024	90.9494	56.1947	6349	2060	6351	632	617	97.6266
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.9868	95.2804	94.6949	56.1929	10942	542	10942	613	287	46.8189
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.1773	98.9247	99.4312	56.1924	1748	19	1748	10	10	100.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.6037	94.0559	99.2933	56.1920	269	17	281	2	2	100.0000
mlin-fermikit	INDEL	D1_5	*	*	96.7247	95.7954	97.6723	56.1904	140575	6170	140399	3346	3212	95.9952
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	92.6051	97.9373	87.8236	56.1886	11063	233	11468	1590	1468	92.3270
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.1986	94.7313	99.7979	56.1836	5430	302	5431	11	9	81.8182
ciseli-custom	INDEL	I1_5	*	*	87.1708	85.4583	88.9534	56.1825	128754	21909	128479	15955	13768	86.2927
ciseli-custom	SNP	tv	tech_badpromoters	homalt	96.1368	97.4359	94.8718	56.1798	38	1	37	2	0	0.0000
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	93.9839	95.1498	92.8462	56.1753	10927	557	10928	842	429	50.9501
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	53.0409	42.6966	70.0000	56.1753	76	102	77	33	31	93.9394
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.6838	97.4223	97.9467	56.1751	36925	977	36731	770	739	95.9740
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5289	99.3598	99.6985	56.1737	27780	179	27779	84	9	10.7143
anovak-vg	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	97.9194	98.3001	97.5417	56.1712	16885	292	17260	435	173	39.7701
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.8847	89.4650	98.7637	56.1710	2157	254	2157	27	25	92.5926
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9381	99.9734	99.9027	56.1708	11293	3	11293	11	11	100.0000
qzeng-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	92.1962	96.6768	88.1125	56.1680	5411	186	12282	1657	662	39.9517
dgrover-gatk	INDEL	I6_15	HG002complexvar	hetalt	97.3563	94.8487	100.0000	56.1679	1160	63	1201	0	0
ltrigg-rtg2	SNP	*	map_l100_m2_e0	*	99.2235	98.6534	99.8003	56.1674	72968	996	72965	146	24	16.4384
dgrover-gatk	SNP	tv	tech_badpromoters	het	98.4615	96.9697	100.0000	56.1644	32	1	32	0	0
egarrison-hhga	INDEL	D16_PLUS	HG002complexvar	hetalt	59.4347	42.5101	98.7500	56.1644	105	142	158	2	2	100.0000
asubramanian-gatk	SNP	tv	tech_badpromoters	het	98.4615	96.9697	100.0000	56.1644	32	1	32	0	0
gduggal-snapfb	INDEL	I1_5	tech_badpromoters	*	81.4815	100.0000	68.7500	56.1644	22	0	22	10	0	0.0000
ndellapenna-hhga	INDEL	I6_15	HG002complexvar	*	96.1681	95.0125	97.3521	56.1640	4553	239	4559	124	74	59.6774
astatham-gatk	INDEL	D1_5	HG002complexvar	het	99.6863	99.4751	99.8985	56.1634	20656	109	20662	21	12	57.1429
jmaeng-gatk	INDEL	*	*	hetalt	95.2835	91.2311	99.7126	56.1602	23024	2213	23247	67	66	98.5075
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.7118	98.0915	99.3400	56.1553	10896	212	10837	72	12	16.6667
qzeng-custom	INDEL	I6_15	HG002complexvar	het	94.4892	95.7962	93.2173	56.1507	2256	99	2625	191	60	31.4136
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	96.3927	94.1176	98.7805	56.1497	80	5	81	1	0	0.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.7409	97.7839	99.7167	56.1491	353	8	352	1	1	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7706	100.0000	97.5710	56.1473	2370	0	2370	59	59	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge