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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1105 1106 1107 1108 1109 1110 1111 1112 1113 ... 1720 1721 » 55401-55450 / 86044 show all
gduggal-bwafb	INDEL	I1_5	*	*	97.8814	96.8991	98.8838	56.3942	145992	4672	146789	1657	1400	84.4900
qzeng-custom	INDEL	D6_15	HG002complexvar	homalt	94.3279	97.3482	91.4894	56.3918	1138	31	1161	108	53	49.0741
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9026	99.9292	99.8761	56.3916	11288	8	11288	14	13	92.8571
gduggal-bwavard	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	97.1225	98.0932	96.1709	56.3915	11215	218	11076	441	100	22.6757
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	31.0781	20.3704	65.5172	56.3910	22	86	38	20	20	100.0000
raldana-dualsentieon	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	77.3333	63.0435	100.0000	56.3910	58	34	58	0	0
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.4762	82.6087	100.0000	56.3910	57	12	58	0	0
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9485	99.9228	99.9742	56.3906	3884	3	3875	1	0	0.0000
gduggal-bwafb	INDEL	*	*	*	96.9474	95.5004	98.4390	56.3888	329039	15503	342492	5431	4691	86.3745
asubramanian-gatk	INDEL	I6_15	HG002complexvar	hetalt	96.0912	93.1316	99.2450	56.3849	1139	84	1183	9	7	77.7778
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.9143	99.8827	99.9458	56.3849	11071	13	11067	6	4	66.6667
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.9159	94.4855	99.4747	56.3830	7933	463	7953	42	13	30.9524
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3829	11292	4	11292	14	13	92.8571
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	56.8293	53.5459	60.5416	56.3805	974	845	1252	816	596	73.0392
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	56.8293	53.5459	60.5416	56.3805	974	845	1252	816	596	73.0392
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9557	99.8850	56.3788	11291	5	11291	13	12	92.3077
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9159	99.9380	99.8938	56.3777	11289	7	11284	12	11	91.6667
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	48.1114	83.3977	33.8073	56.3749	216	43	214	419	397	94.7494
ckim-vqsr	INDEL	D1_5	HG002complexvar	het	99.6767	99.4799	99.8743	56.3731	20657	108	20661	26	12	46.1538
jli-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9133	99.8812	99.9455	56.3725	20175	24	20175	11	7	63.6364
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3643	11292	4	11292	14	13	92.8571
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	96.5517	93.3333	100.0000	56.3636	70	5	72	0	0
ckim-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7942	99.6237	99.9652	56.3615	20123	76	20123	7	7	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	56.3613	343	0	343	0	0
ciseli-custom	INDEL	*	HG002complexvar	homalt	81.7869	88.0268	76.3731	56.3608	23791	3236	23555	7287	5323	73.0479
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	83.8170	96.5624	74.0438	56.3581	3736	133	4259	1493	1471	98.5265
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.5832	95.9437	99.2798	56.3557	30134	1274	30188	219	93	42.4658
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.5832	95.9437	99.2798	56.3557	30134	1274	30188	219	93	42.4658
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9292	99.9646	99.8938	56.3468	11292	4	11292	12	11	91.6667
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	*	95.3553	92.3423	98.5714	56.3410	205	17	207	3	1	33.3333
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5589	100.0000	99.1217	56.3407	1580	0	1580	14	0	0.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.1330	96.7301	99.5772	56.3405	30381	1027	30382	129	103	79.8450
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.1330	96.7301	99.5772	56.3405	30381	1027	30382	129	103	79.8450
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3374	11292	4	11292	14	13	92.8571
hfeng-pmm3	INDEL	I6_15	HG002complexvar	hetalt	97.0105	94.1946	100.0000	56.3370	1152	71	1192	0	0
ckim-isaac	INDEL	*	HG002complexvar	hetalt	77.5562	66.5856	92.8550	56.3369	2463	1236	3119	240	203	84.5833
ciseli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	70.2572	87.5000	58.6914	56.3300	7315	1045	7266	5114	4566	89.2843
ciseli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	70.2572	87.5000	58.6914	56.3300	7315	1045	7266	5114	4566	89.2843
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	53.9976	85.3746	39.4857	56.3279	4991	855	5021	7695	7654	99.4672
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	53.9976	85.3746	39.4857	56.3279	4991	855	5021	7695	7654	99.4672
jpowers-varprowl	INDEL	I6_15	HG002complexvar	het	76.9804	82.9299	71.8274	56.3262	1953	402	1981	777	772	99.3565
bgallagher-sentieon	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9232	99.8960	99.9505	56.3257	20178	21	20178	10	10	100.0000
ltrigg-rtg1	INDEL	D1_5	*	homalt	99.7747	99.5851	99.9650	56.3253	48723	203	48596	17	16	94.1176
raldana-dualsentieon	INDEL	D1_5	*	het	99.5220	99.2680	99.7773	56.3227	86933	641	86937	194	136	70.1031
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7706	100.0000	97.5710	56.3208	2370	0	2370	59	59	100.0000
ckim-dragen	INDEL	D6_15	*	*	97.9198	97.6928	98.1478	56.3201	25490	602	25488	481	433	90.0208
hfeng-pmm2	INDEL	D1_5	*	het	99.5604	99.3114	99.8107	56.3200	86971	603	86977	165	71	43.0303
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.9458	97.7276	98.1651	56.3127	31265	727	31189	583	575	98.6278
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8103	99.7360	99.8847	56.3092	14731	39	14733	17	4	23.5294
astatham-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8587	99.7475	99.9702	56.3085	20148	51	20148	6	6	100.0000

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