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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1104 1105 1106 1107 1108 1109 1110 1111 1112 ... 1720 1721 » 55351-55400 / 86044 show all
cchapple-custom	SNP	ti	map_l100_m0_e0	homalt	98.0662	96.2182	99.9866	56.4787	7480	294	7479	1	1	100.0000
ciseli-custom	INDEL	D6_15	HG002complexvar	het	69.9812	65.9506	74.5366	56.4774	2057	1062	2131	728	196	26.9231
asubramanian-gatk	INDEL	D1_5	HG002complexvar	het	99.2391	98.6082	99.8781	56.4759	20476	289	20484	25	15	60.0000
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	23.7730	13.6201	93.3884	56.4748	38	241	113	8	8	100.0000
ciseli-custom	INDEL	*	*	homalt	84.6742	88.5829	81.0959	56.4739	110881	14291	110644	25792	22639	87.7753
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.7500	99.1632	98.3402	56.4720	711	6	711	12	11	91.6667
jli-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.7391	98.3237	99.1580	56.4704	15778	269	15780	134	125	93.2836
hfeng-pmm2	INDEL	I6_15	HG002complexvar	hetalt	97.2701	94.6852	100.0000	56.4680	1158	65	1198	0	0
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	97.4506	95.0280	100.0000	56.4672	1529	80	1528	0	0
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.9858	99.4610	98.5152	56.4669	6643	36	6635	100	98	98.0000
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6597	99.8868	99.4337	56.4666	6177	7	6145	35	2	5.7143
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.1575	94.0810	96.2589	56.4633	3020	190	3242	126	118	93.6508
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.1071	92.2942	95.9927	56.4631	527	44	527	22	15	68.1818
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.4772	97.0000	100.0000	56.4626	194	6	192	0	0
hfeng-pmm1	INDEL	*	HG002complexvar	het	98.8731	97.9378	99.8265	56.4583	45259	953	44888	78	43	55.1282
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	71.8285	56.3107	99.1525	56.4576	116	90	117	1	0	0.0000
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	77.4599	71.6987	84.2278	56.4520	11527	4550	21313	3991	3815	95.5901
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	77.4599	71.6987	84.2278	56.4520	11527	4550	21313	3991	3815	95.5901
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	61.7012	83.4697	48.9383	56.4509	510	101	484	505	504	99.8020
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	89.4563	82.1519	98.1864	56.4502	1947	423	1949	36	33	91.6667
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	98.2308	97.0167	99.4755	56.4489	5561	171	5690	30	15	50.0000
gduggal-snapvard	INDEL	D1_5	HG002complexvar	het	89.8124	96.1325	84.2721	56.4465	19960	803	25510	4761	3355	70.4684
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.6542	98.2774	99.0338	56.4448	16146	283	16093	157	70	44.5860
dgrover-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9282	99.8911	99.9653	56.4446	20177	22	20177	7	7	100.0000
hfeng-pmm3	INDEL	*	HG002complexvar	het	98.8973	97.9724	99.8399	56.4422	45275	937	44901	72	42	58.3333
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8060	99.8383	99.7738	56.4379	6174	10	6174	14	1	7.1429
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	27.4390	41.6667	20.4545	56.4356	10	14	9	35	7	20.0000
hfeng-pmm1	INDEL	I6_15	HG002complexvar	hetalt	97.1405	94.4399	100.0000	56.4346	1155	68	1195	0	0
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2985	99.5634	99.0351	56.4261	6157	27	6158	60	1	1.6667
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6192	99.8219	99.4173	56.4253	3924	7	3924	23	0	0.0000
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.2805	91.4956	99.3921	56.4238	312	29	327	2	2	100.0000
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	83.6519	73.9268	96.3233	56.4236	6992	2466	6995	267	204	76.4045
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.4850	94.3803	98.6856	56.4231	3678	219	3679	49	42	85.7143
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.0046	95.1501	98.9328	56.4186	3708	189	3708	40	39	97.5000
mlin-fermikit	SNP	ti	map_l100_m2_e0	het	72.2999	57.0570	98.6561	56.4180	17472	13150	17472	238	9	3.7815
jmaeng-gatk	INDEL	D1_5	HG002complexvar	het	99.6962	99.5666	99.8262	56.4161	20675	90	20679	36	18	50.0000
hfeng-pmm3	INDEL	I1_5	HG002complexvar	*	99.5912	99.2956	99.8886	56.4158	33128	235	33172	37	24	64.8649
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	88.2450	85.0667	91.6700	56.4134	4973	873	4523	411	383	93.1873
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	88.2450	85.0667	91.6700	56.4134	4973	873	4523	411	383	93.1873
cchapple-custom	INDEL	I1_5	HG002complexvar	het	99.2036	98.7960	99.6147	56.4110	17970	219	19130	74	62	83.7838
jli-custom	INDEL	*	HG002complexvar	homalt	99.8318	99.8964	99.7673	56.4104	26999	28	27007	63	57	90.4762
jli-custom	SNP	ti	map_l100_m1_e0	homalt	99.7965	99.6548	99.9386	56.4067	17898	62	17898	11	11	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4003	99.3113	99.4894	56.4059	6633	46	6625	34	32	94.1176
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3861	99.7540	99.0208	56.4034	2433	6	2427	24	3	12.5000
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	88.0130	91.8782	84.4600	56.4024	1086	96	1087	200	133	66.5000
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	79.6536	70.7724	91.0837	56.4003	2758	1139	1849	181	175	96.6851
ndellapenna-hhga	INDEL	D6_15	HG002complexvar	het	92.6198	92.8205	92.4200	56.3998	2896	224	2975	244	197	80.7377
ndellapenna-hhga	INDEL	*	*	het	97.8590	98.8060	96.9301	56.3967	191815	2318	193328	6123	5425	88.6004
hfeng-pmm3	INDEL	D1_5	HG002compoundhet	hetalt	96.9544	94.1073	99.9792	56.3965	9614	602	9613	2	0	0.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	82.1918	84.5070	80.0000	56.3953	60	11	60	15	15	100.0000

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