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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1099 1100 1101 1102 1103 1104 1105 1106 1107 ... 1720 1721 » 55101-55150 / 86044 show all
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	98.2592	98.0695	98.4496	56.8562	254	5	254	4	3	75.0000
jlack-gatk	INDEL	*	HG002complexvar	homalt	99.5756	99.8076	99.3448	56.8540	26975	52	26988	178	171	96.0674
gduggal-bwavard	INDEL	D6_15	HG002complexvar	*	76.1590	74.2173	78.2051	56.8522	3935	1367	3782	1054	954	90.5123
ckim-dragen	SNP	ti	map_siren	*	99.0224	99.5177	98.5321	56.8522	99871	484	99880	1488	162	10.8871
gduggal-bwaplat	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	85.0109	74.4135	99.1279	56.8517	2728	938	2728	24	21	87.5000
eyeh-varpipe	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	58.3043	52.2088	66.0112	56.8516	2080	1904	2249	1158	1030	88.9465
ghariani-varprowl	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.9200	99.9179	97.9418	56.8515	6083	5	6091	128	59	46.0938
ckim-gatk	INDEL	I1_5	HG002complexvar	*	99.4404	99.0498	99.8341	56.8511	33046	317	33092	55	41	74.5455
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	89.9721	88.4125	91.5877	56.8507	763	100	773	71	41	57.7465
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3741	98.7559	100.0000	56.8481	1667	21	1673	0	0
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.0900	99.5359	98.6480	56.8443	6648	31	6640	91	88	96.7033
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5951	99.7972	99.3939	56.8439	492	1	492	3	0	0.0000
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	51.7017	43.2260	64.3120	56.8434	1758	2309	1748	970	697	71.8557
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.4047	99.1254	97.6945	56.8408	340	3	339	8	4	50.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.1945	95.5607	98.8851	56.8401	3724	173	3725	42	35	83.3333
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7133	97.7896	99.6546	56.8394	1106	25	1154	4	4	100.0000
hfeng-pmm1	INDEL	D1_5	HG002complexvar	*	99.1888	98.4747	99.9133	56.8376	32216	499	32267	28	18	64.2857
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8787	99.8366	99.9207	56.8327	20166	33	20166	16	7	43.7500
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.0012	99.6310	98.3793	56.8305	2430	9	2428	40	7	17.5000
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	92.3526	88.8889	96.0973	56.8254	1184	148	1699	69	59	85.5072
mlin-fermikit	INDEL	*	*	homalt	97.5803	98.1713	96.9963	56.8203	122883	2289	122774	3802	3715	97.7117
hfeng-pmm3	INDEL	I1_5	*	*	99.5494	99.2672	99.8332	56.8186	149560	1104	149606	250	187	74.8000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.6139	90.0293	99.6904	56.8182	307	34	322	1	1	100.0000
jpowers-varprowl	SNP	tv	tech_badpromoters	homalt	98.7013	97.4359	100.0000	56.8182	38	1	38	0	0
ltrigg-rtg1	SNP	*	map_l100_m1_e0	*	99.3061	98.8274	99.7894	56.8168	71554	849	71550	151	36	23.8411
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0835	99.3208	98.8474	56.8151	11406	78	11406	133	125	93.9850
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	31.0297	20.4204	64.5833	56.8123	136	530	217	119	119	100.0000
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	31.0297	20.4204	64.5833	56.8123	136	530	217	119	119	100.0000
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	43.8095	30.0844	80.5650	56.8082	713	1657	713	172	158	91.8605
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	79.6906	72.0588	89.1304	56.8075	49	19	82	10	10	100.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	93.1635	90.0348	96.5174	56.7974	777	86	776	28	7	25.0000
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	22.9391	31.0680	18.1818	56.7921	64	142	48	216	4	1.8519
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	55.0165	87.3144	40.1609	56.7914	647	94	649	967	945	97.7249
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.8686	89.9090	93.9155	56.7894	1185	133	1312	85	81	95.2941
jpowers-varprowl	INDEL	*	*	*	86.4885	85.2886	87.7226	56.7888	293855	50687	293627	41095	40121	97.6299
gduggal-snapvard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.3173	97.2973	99.3590	56.7867	468	13	465	3	1	33.3333
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	79.4291	78.9108	79.9542	56.7822	681	182	698	175	172	98.2857
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	83.2650	74.7927	93.9018	56.7791	1804	608	1817	118	62	52.5424
ciseli-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.8177	99.4251	96.2614	56.7778	6053	35	6025	234	108	46.1538
ltrigg-rtg1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4242	99.5483	99.3004	56.7770	35259	160	35343	249	16	6.4257
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	68.8100	56.9519	86.9048	56.7753	213	161	219	33	31	93.9394
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5789	99.5842	99.5736	56.7742	479	2	467	2	1	50.0000
ciseli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	77.4749	88.1419	69.1110	56.7739	5887	792	6258	2797	1501	53.6646
ndellapenna-hhga	INDEL	D1_5	*	*	96.9939	96.6915	97.2981	56.7713	141890	4855	141954	3942	3509	89.0157
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5086	99.8706	99.1491	56.7671	6176	8	6176	53	2	3.7736
ghariani-varprowl	INDEL	I16_PLUS	HG002compoundhet	*	1.7907	1.3532	2.6460	56.7653	29	2114	29	1067	1059	99.2502
gduggal-snapvard	INDEL	I1_5	HG002compoundhet	homalt	81.6095	75.9878	88.1295	56.7652	250	79	245	33	30	90.9091
cchapple-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.2714	98.9362	99.6089	56.7644	465	5	764	3	2	66.6667
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	85.5828	97.0678	76.5280	56.7627	3178	96	3606	1106	1089	98.4629
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.3588	95.3386	99.4664	56.7621	41315	2020	41569	223	143	64.1256

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