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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1098 1099 1100 1101 1102 1103 1104 1105 1106 ... 1720 1721 » 55051-55100 / 86044 show all
gduggal-snapfb	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	67.2507	57.7531	80.4869	56.9596	3069	2245	2215	537	513	95.5307
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.2405	99.4924	98.9899	56.9565	196	1	196	2	2	100.0000
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	84.1017	76.1905	93.8462	56.9536	64	20	61	4	3	75.0000
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0489	99.3034	98.7958	56.9516	11404	80	11404	139	132	94.9640
gduggal-bwaplat	SNP	tv	HG002compoundhet	*	87.7776	87.6611	87.8944	56.9502	7822	1101	7856	1082	151	13.9556
ckim-isaac	SNP	tv	map_siren	het	84.7375	73.6377	99.7775	56.9492	21067	7542	21072	47	12	25.5319
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.0103	96.5217	99.5455	56.9472	222	8	219	1	1	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9638	99.9277	100.0000	56.9470	1382	1	1382	0	0
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	97.1070	95.3734	98.9048	56.9460	1175	57	1174	13	12	92.3077
gduggal-snapfb	SNP	ti	tech_badpromoters	*	95.5056	100.0000	91.3978	56.9444	85	0	85	8	0	0.0000
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	90.1316	95.9720	84.9612	56.9426	548	23	548	97	95	97.9381
hfeng-pmm3	INDEL	*	*	*	99.3628	99.0161	99.7120	56.9384	341152	3390	341013	985	798	81.0152
ckim-dragen	INDEL	D1_5	HG002compoundhet	hetalt	96.7587	94.0877	99.5857	56.9377	9612	604	9615	40	40	100.0000
ghariani-varprowl	INDEL	D6_15	*	*	61.5999	58.5275	65.0128	56.9372	15271	10821	15265	8215	8072	98.2593
bgallagher-sentieon	SNP	ti	map_l100_m1_e0	homalt	99.7937	99.6659	99.9218	56.9365	17900	60	17900	14	12	85.7143
mlin-fermikit	SNP	ti	map_l150_m1_e0	homalt	60.2226	50.2115	75.2198	56.9340	3679	3648	3679	1212	1145	94.4719
bgallagher-sentieon	INDEL	*	*	hetalt	95.9976	92.5387	99.7251	56.9311	23354	1883	23582	65	64	98.4615
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.1202	98.5423	99.7050	56.9250	338	5	338	1	0	0.0000
egarrison-hhga	INDEL	D1_5	HG002complexvar	homalt	98.5958	99.1036	98.0931	56.9237	10503	95	10494	204	148	72.5490
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	93.3333	100.0000	87.5000	56.9231	47	0	49	7	2	28.5714
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8004	99.7008	99.9001	56.9199	6998	21	7003	7	4	57.1429
egarrison-hhga	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	79.7819	78.2631	81.3608	56.9182	3118	866	3121	715	658	92.0280
eyeh-varpipe	INDEL	I16_PLUS	*	hetalt	18.8152	10.4862	91.4634	56.9177	220	1878	225	21	21	100.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	91.9356	88.5572	95.5819	56.9174	890	115	887	41	15	36.5854
bgallagher-sentieon	INDEL	I1_5	HG002complexvar	*	99.6940	99.5564	99.8319	56.9171	33215	148	33263	56	45	80.3571
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.0678	96.6163	99.5636	56.9165	1599	56	1597	7	5	71.4286
gduggal-bwaplat	INDEL	*	HG002complexvar	homalt	93.8564	89.6215	98.5114	56.9159	24222	2805	24155	365	314	86.0274
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2332	99.8240	96.6922	56.9130	5671	10	5671	194	193	99.4845
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2201	98.6457	99.8013	56.9126	19593	269	19586	39	21	53.8462
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	69.7822	60.7755	81.9227	56.9113	1630	1052	784	173	149	86.1272
eyeh-varpipe	SNP	*	HG002compoundhet	het	94.4229	98.7586	90.4519	56.9085	14002	176	5845	617	93	15.0729
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0655	98.4745	99.6636	56.9081	19559	303	19552	66	47	71.2121
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	83.0914	93.1398	75.0000	56.9061	353	26	351	117	113	96.5812
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	98.9147	98.8772	98.9521	56.9032	1321	15	1322	14	5	35.7143
jli-custom	INDEL	*	HG002complexvar	*	99.2454	98.7574	99.7382	56.8994	75982	956	75827	199	151	75.8794
gduggal-bwafb	INDEL	D1_5	HG002complexvar	*	98.0343	97.0289	99.0607	56.8977	31743	972	31851	302	219	72.5166
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7540	99.8860	99.6224	56.8960	7011	8	6859	26	11	42.3077
ltrigg-rtg2	INDEL	D16_PLUS	HG002complexvar	hetalt	90.0287	86.6397	93.6937	56.8932	214	33	208	14	14	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.9848	98.9848	98.9848	56.8928	195	2	195	2	2	100.0000
ckim-vqsr	INDEL	I1_5	HG002complexvar	*	99.3737	98.9030	99.8489	56.8918	32997	366	33042	50	41	82.0000
gduggal-bwaplat	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	67.4105	51.3337	98.1491	56.8902	1963	1861	1962	37	36	97.2973
jli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2054	98.6910	99.7252	56.8874	19602	260	19598	54	35	64.8148
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7452	99.9341	99.5570	56.8831	6068	4	6068	27	27	100.0000
rpoplin-dv42	SNP	tv	map_siren	*	99.5468	99.4818	99.6119	56.8797	45692	238	45686	178	89	50.0000
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	87.4670	80.5556	95.6757	56.8765	174	42	177	8	7	87.5000
astatham-gatk	INDEL	I1_5	HG002compoundhet	hetalt	97.1718	94.5245	99.9718	56.8751	10565	612	10626	3	3	100.0000
mlin-fermikit	SNP	tv	map_l100_m1_e0	het	69.7650	53.9859	98.5774	56.8653	8323	7094	8315	120	2	1.6667
ckim-isaac	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	84.4285	76.5337	94.1394	56.8627	4067	1247	4080	254	153	60.2362
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	88.4481	79.2887	100.0000	56.8627	379	99	374	0	0
hfeng-pmm2	INDEL	D6_15	HG002complexvar	*	96.9573	94.6624	99.3663	56.8597	5019	283	5018	32	26	81.2500

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