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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1093 1094 1095 1096 1097 1098 1099 1100 1101 ... 1720 1721 » 54801-54850 / 86044 show all
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6954	99.5943	99.7967	57.2917	491	2	491	1	0	0.0000
gduggal-snapvard	SNP	ti	tech_badpromoters	het	91.7647	88.6364	95.1220	57.2917	39	5	39	2	1	50.0000
jli-custom	INDEL	I6_15	HG002complexvar	het	98.4497	97.1975	99.7346	57.2913	2289	66	2255	6	1	16.6667
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.7633	99.8064	97.7418	57.2891	5670	11	5670	131	129	98.4733
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	92.3491	87.7265	97.4860	57.2867	4260	596	4343	112	72	64.2857
rpoplin-dv42	INDEL	*	*	hetalt	95.6899	92.3010	99.3372	57.2847	23294	1943	23381	156	151	96.7949
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.7495	97.6834	95.8333	57.2816	253	6	253	11	10	90.9091
gduggal-snapfb	INDEL	*	*	*	92.2602	90.5733	94.0112	57.2799	312063	32479	322983	20575	9778	47.5237
gduggal-snapplat	SNP	ti	HG002compoundhet	het	78.6871	89.5844	70.1534	57.2786	8515	990	8645	3678	282	7.6672
ltrigg-rtg1	SNP	tv	map_l100_m2_e1	het	98.9548	98.3185	99.5995	57.2767	15670	268	15666	63	5	7.9365
ltrigg-rtg1	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.6456	96.2766	99.0541	57.2748	724	28	733	7	7	100.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	95.8559	92.6573	99.2832	57.2741	265	21	277	2	2	100.0000
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	25.8993	40.0000	19.1489	57.2727	10	15	9	38	8	21.0526
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2514	99.9113	98.6002	57.2710	1127	1	1127	16	10	62.5000
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6944	99.7089	99.6800	57.2704	17127	50	17130	55	30	54.5455
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4268	99.6283	99.2261	57.2682	2948	11	2949	23	1	4.3478
dgrover-gatk	INDEL	I1_5	HG002complexvar	*	99.7285	99.6044	99.8530	57.2674	33231	132	33279	49	38	77.5510
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	57.2671	343	0	343	1	0	0.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	57.2671	343	0	343	1	0	0.0000
raldana-dualsentieon	SNP	tv	map_siren	*	99.5658	99.6081	99.5235	57.2670	45750	180	45742	219	8	3.6530
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.7954	98.2348	99.3624	57.2660	16139	290	16208	104	51	49.0385
rpoplin-dv42	SNP	tv	map_siren	het	99.4388	99.4093	99.4683	57.2644	28440	169	28436	152	65	42.7632
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	74.6828	72.3465	77.1751	57.2642	1520	581	1437	425	403	94.8235
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	57.2621	1383	0	1383	0	0
gduggal-bwaplat	INDEL	D6_15	*	homalt	90.8801	84.1132	98.8312	57.2595	5321	1005	5327	63	57	90.4762
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	91.9743	92.1019	91.8470	57.2556	26028	2232	27420	2434	1757	72.1857
raldana-dualsentieon	INDEL	*	HG002complexvar	*	98.9594	98.2323	99.6974	57.2556	75578	1360	75441	229	196	85.5895
qzeng-custom	SNP	*	map_l100_m1_e0	homalt	87.6866	78.4579	99.3758	57.2534	21186	5817	20855	131	129	98.4733
ckim-dragen	INDEL	*	func_cds	het	97.2603	99.5327	95.0893	57.2519	213	1	213	11	0	0.0000
jlack-gatk	INDEL	I1_5	HG002compoundhet	hetalt	94.9037	90.3820	99.9017	57.2515	10102	1075	10162	10	9	90.0000
anovak-vg	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	97.5583	98.0061	97.1145	57.2508	10863	221	11039	328	130	39.6341
anovak-vg	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	53.2492	76.3251	40.8875	57.2493	216	67	258	373	323	86.5952
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	43.2688	35.3933	55.6522	57.2491	63	115	64	51	38	74.5098
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7831	99.5671	100.0000	57.2491	460	2	460	0	0
jmaeng-gatk	INDEL	I6_15	HG002complexvar	*	97.9019	96.8698	98.9563	57.2482	4642	150	4646	49	49	100.0000
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	91.4286	91.2173	91.6409	57.2469	592	57	592	54	52	96.2963
rpoplin-dv42	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	57.2464	59	0	59	0	0
raldana-dualsentieon	INDEL	D6_15	HG002complexvar	*	96.9018	94.6813	99.2289	57.2443	5020	282	5019	39	37	94.8718
jpowers-varprowl	INDEL	D6_15	HG002complexvar	het	82.3223	90.1603	75.7381	57.2412	2813	307	2822	904	873	96.5708
gduggal-snapvard	SNP	*	HG002compoundhet	het	77.1322	83.8682	71.3978	57.2411	11890	2287	13270	5316	2307	43.3973
gduggal-bwafb	SNP	ti	map_siren	*	99.3101	99.3981	99.2222	57.2359	99751	604	99755	782	145	18.5422
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4350	99.2509	99.6198	57.2358	265	2	262	1	0	0.0000
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.7858	98.2767	99.3002	57.2345	27773	487	27812	196	123	62.7551
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	63.6016	46.9512	98.5507	57.2314	77	87	204	3	3	100.0000
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	63.8520	52.6367	81.1407	57.2311	2146	1931	3201	744	345	46.3710
jli-custom	INDEL	*	*	homalt	99.7041	99.8538	99.5548	57.2311	124989	183	124999	559	535	95.7066
ltrigg-rtg2	SNP	tv	map_l125_m2_e0	het	98.4778	97.2706	99.7153	57.2310	10157	285	10156	29	2	6.8966
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.0969	99.4760	98.7206	57.2310	6644	35	6636	86	83	96.5116
ghariani-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.0582	99.4990	96.6586	57.2289	14696	74	14695	508	335	65.9449
ltrigg-rtg1	SNP	tv	map_l100_m1_e0	*	99.2885	98.8286	99.7528	57.2287	24214	287	24208	60	9	15.0000

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