PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54401-54450 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.3823 | 95.0803 | 99.7986 | 57.9620 | 5450 | 282 | 5451 | 11 | 9 | 81.8182 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 31.9191 | 20.6647 | 70.0935 | 57.9568 | 342 | 1313 | 300 | 128 | 30 | 23.4375 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7781 | 99.9506 | 99.6061 | 57.9561 | 6069 | 3 | 6069 | 24 | 23 | 95.8333 | |
| eyeh-varpipe | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.9545 | 10 | 0 | 37 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7781 | 99.9671 | 99.5898 | 57.9481 | 6070 | 2 | 6070 | 25 | 24 | 96.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.7746 | 91.8919 | 100.0000 | 57.9448 | 442 | 39 | 442 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | HG002complexvar | het | 99.5556 | 99.3270 | 99.7852 | 57.9433 | 45901 | 311 | 45518 | 98 | 61 | 62.2449 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8841 | 99.7685 | 100.0000 | 57.9364 | 3878 | 9 | 3877 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 54.1272 | 40.3636 | 82.1340 | 57.9332 | 333 | 492 | 331 | 72 | 71 | 98.6111 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 54.1272 | 40.3636 | 82.1340 | 57.9332 | 333 | 492 | 331 | 72 | 71 | 98.6111 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7347 | 99.5374 | 99.9328 | 57.9303 | 16353 | 76 | 16352 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | I1_5 | * | het | 99.5073 | 99.2827 | 99.7331 | 57.9285 | 78474 | 567 | 78457 | 210 | 142 | 67.6190 | |
| dgrover-gatk | INDEL | * | HG002complexvar | het | 99.6862 | 99.5586 | 99.8141 | 57.9282 | 46008 | 204 | 45634 | 85 | 51 | 60.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.6132 | 95.1837 | 98.0864 | 57.9273 | 8004 | 405 | 7996 | 156 | 101 | 64.7436 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.0400 | 86.8852 | 91.3043 | 57.9268 | 106 | 16 | 126 | 12 | 11 | 91.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.4805 | 97.1646 | 97.7985 | 57.9258 | 15592 | 455 | 15593 | 351 | 340 | 96.8661 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | homalt | 96.1786 | 96.9145 | 95.4537 | 57.9255 | 10271 | 327 | 10183 | 485 | 469 | 96.7010 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.7435 | 96.0727 | 97.4237 | 57.9207 | 16977 | 694 | 16979 | 449 | 417 | 92.8731 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.7435 | 96.0727 | 97.4237 | 57.9207 | 16977 | 694 | 16979 | 449 | 417 | 92.8731 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | het | 97.9852 | 96.2712 | 99.7612 | 57.9109 | 6687 | 259 | 6685 | 16 | 1 | 6.2500 | |
| raldana-dualsentieon | INDEL | * | * | het | 99.3035 | 99.0228 | 99.5858 | 57.9096 | 192236 | 1897 | 191867 | 798 | 611 | 76.5664 | |
| jli-custom | SNP | ti | map_l100_m0_e0 | homalt | 99.6776 | 99.4340 | 99.9224 | 57.9039 | 7730 | 44 | 7730 | 6 | 6 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | het | 71.6803 | 56.3051 | 98.6068 | 57.9033 | 26125 | 20274 | 26117 | 369 | 11 | 2.9810 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 35.8293 | 22.1968 | 92.8622 | 57.9026 | 1261 | 4420 | 1301 | 100 | 93 | 93.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6255 | 99.4585 | 99.7930 | 57.9022 | 3857 | 21 | 3857 | 8 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7617 | 99.9506 | 99.5734 | 57.9016 | 6069 | 3 | 6069 | 26 | 25 | 96.1538 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1862 | 98.0000 | 98.3732 | 57.8969 | 1029 | 21 | 1028 | 17 | 10 | 58.8235 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 76.9837 | 67.6931 | 89.2302 | 57.8962 | 2638 | 1259 | 2643 | 319 | 317 | 99.3730 | |
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | * | 52.3097 | 37.7919 | 84.9392 | 57.8951 | 4823 | 7939 | 4822 | 855 | 764 | 89.3567 | |
| raldana-dualsentieon | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 57.8947 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.9495 | 90.3846 | 100.0000 | 57.8947 | 47 | 5 | 48 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | homalt | 85.7143 | 100.0000 | 75.0000 | 57.8947 | 6 | 0 | 6 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.8947 | 8 | 0 | 8 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.8947 | 8 | 0 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 57.8947 | 8 | 4 | 8 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.8947 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | * | homalt | 87.5361 | 80.5253 | 95.8841 | 57.8947 | 1257 | 304 | 1258 | 54 | 51 | 94.4444 | |
| gduggal-bwavard | INDEL | D6_15 | tech_badpromoters | * | 84.8485 | 82.3529 | 87.5000 | 57.8947 | 14 | 3 | 14 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 44.6809 | 30.0000 | 87.5000 | 57.8947 | 6 | 14 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 54.2254 | 39.2857 | 87.5000 | 57.8947 | 11 | 17 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 50.6365 | 36.0825 | 84.8684 | 57.8947 | 140 | 248 | 129 | 23 | 23 | 100.0000 | |
| ckim-dragen | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.8947 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.5175 | 83.0986 | 81.9444 | 57.8947 | 59 | 12 | 59 | 13 | 13 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.3115 | 93.4534 | 63.0682 | 57.8947 | 571 | 40 | 666 | 390 | 384 | 98.4615 | |
| ckim-isaac | INDEL | D6_15 | tech_badpromoters | het | 94.7368 | 90.0000 | 100.0000 | 57.8947 | 9 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 57.8947 | 8 | 0 | 8 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | func_cds | het | 91.8033 | 96.5517 | 87.5000 | 57.8947 | 28 | 1 | 28 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 48.7085 | 36.0656 | 75.0000 | 57.8947 | 22 | 39 | 12 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6714 | 99.9177 | 99.4264 | 57.8940 | 6067 | 5 | 6067 | 35 | 34 | 97.1429 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 66.2455 | 82.5976 | 55.2980 | 57.8918 | 973 | 205 | 1670 | 1350 | 1223 | 90.5926 | |