PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54351-54400 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | * | * | het | 99.4705 | 99.1923 | 99.7504 | 58.0356 | 192565 | 1568 | 192191 | 481 | 313 | 65.0728 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4422 | 99.5809 | 99.3038 | 58.0347 | 4277 | 18 | 4279 | 30 | 5 | 16.6667 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.4159 | 90.6122 | 90.2204 | 58.0347 | 666 | 69 | 655 | 71 | 68 | 95.7746 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 94.1021 | 89.2612 | 99.4983 | 58.0297 | 9085 | 1093 | 9122 | 46 | 12 | 26.0870 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.0523 | 77.6490 | 84.7677 | 58.0295 | 24388 | 7020 | 25176 | 4524 | 4294 | 94.9160 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.0523 | 77.6490 | 84.7677 | 58.0295 | 24388 | 7020 | 25176 | 4524 | 4294 | 94.9160 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002complexvar | hetalt | 95.3064 | 91.3328 | 99.6416 | 58.0293 | 1117 | 106 | 1112 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | HG002complexvar | het | 87.0231 | 88.2917 | 85.7906 | 58.0288 | 18332 | 2431 | 18318 | 3034 | 650 | 21.4239 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | hetalt | 96.0725 | 92.6597 | 99.7463 | 58.0281 | 1944 | 154 | 1966 | 5 | 5 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.2180 | 98.6853 | 93.8711 | 58.0279 | 16213 | 216 | 34875 | 2277 | 1868 | 82.0378 | |
| jlack-gatk | INDEL | D1_5 | HG002complexvar | * | 99.4067 | 99.2878 | 99.5259 | 58.0276 | 32482 | 233 | 32539 | 155 | 92 | 59.3548 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 67.9174 | 51.7143 | 98.9071 | 58.0275 | 181 | 169 | 181 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_siren | homalt | 99.8859 | 99.8782 | 99.8937 | 58.0270 | 17219 | 21 | 16916 | 18 | 8 | 44.4444 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.5741 | 90.2916 | 94.9750 | 58.0257 | 14834 | 1595 | 15952 | 844 | 289 | 34.2417 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 58.0247 | 63 | 21 | 34 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l100_m0_e0 | * | 98.9181 | 98.0616 | 99.7897 | 58.0234 | 21349 | 422 | 21353 | 45 | 17 | 37.7778 | |
| jlack-gatk | INDEL | * | HG002complexvar | * | 99.2231 | 99.0863 | 99.3603 | 58.0205 | 76235 | 703 | 76113 | 490 | 357 | 72.8571 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8442 | 97.6336 | 96.0674 | 58.0189 | 3672 | 89 | 5814 | 238 | 216 | 90.7563 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8442 | 97.6336 | 96.0674 | 58.0189 | 3672 | 89 | 5814 | 238 | 216 | 90.7563 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | het | 98.5451 | 97.3516 | 99.7684 | 58.0187 | 28855 | 785 | 28856 | 67 | 6 | 8.9552 | |
| gduggal-snapfb | INDEL | I1_5 | * | * | 94.6996 | 95.8769 | 93.5508 | 58.0186 | 144452 | 6212 | 145507 | 10031 | 3046 | 30.3659 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 49.9555 | 43.2887 | 59.0497 | 58.0143 | 2164 | 2835 | 2150 | 1491 | 1450 | 97.2502 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 49.9555 | 43.2887 | 59.0497 | 58.0143 | 2164 | 2835 | 2150 | 1491 | 1450 | 97.2502 | |
| jli-custom | INDEL | * | * | het | 99.5119 | 99.3015 | 99.7232 | 58.0133 | 192777 | 1356 | 192389 | 534 | 340 | 63.6704 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 87.6239 | 79.2796 | 97.9313 | 58.0115 | 2223 | 581 | 2225 | 47 | 44 | 93.6170 | |
| jmaeng-gatk | INDEL | * | HG002complexvar | het | 99.5676 | 99.3876 | 99.7482 | 58.0104 | 45929 | 283 | 45560 | 115 | 73 | 63.4783 | |
| gduggal-snapplat | INDEL | D1_5 | HG002compoundhet | homalt | 26.1575 | 72.5086 | 15.9570 | 58.0098 | 211 | 80 | 371 | 1954 | 1741 | 89.0993 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 79.7260 | 75.6106 | 84.3152 | 58.0080 | 4458 | 1438 | 2204 | 410 | 248 | 60.4878 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 79.7260 | 75.6106 | 84.3152 | 58.0080 | 4458 | 1438 | 2204 | 410 | 248 | 60.4878 | |
| cchapple-custom | INDEL | * | * | het | 99.2026 | 98.9188 | 99.4881 | 58.0034 | 192034 | 2099 | 238847 | 1229 | 782 | 63.6290 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6338 | 99.4406 | 99.8276 | 58.0012 | 11022 | 62 | 11004 | 19 | 1 | 5.2632 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 72.2778 | 90.5780 | 60.1295 | 57.9997 | 12459 | 1296 | 27033 | 17925 | 14535 | 81.0879 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 72.2778 | 90.5780 | 60.1295 | 57.9997 | 12459 | 1296 | 27033 | 17925 | 14535 | 81.0879 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.3268 | 94.9581 | 99.8166 | 57.9977 | 5443 | 289 | 5444 | 10 | 9 | 90.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m0_e0 | homalt | 99.7165 | 99.5241 | 99.9096 | 57.9975 | 7737 | 37 | 7737 | 7 | 6 | 85.7143 | |
| mlin-fermikit | SNP | * | map_l100_m2_e1 | het | 71.9034 | 56.5824 | 98.6024 | 57.9966 | 26536 | 20362 | 26528 | 376 | 11 | 2.9255 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | hetalt | 96.8057 | 94.1946 | 99.5656 | 57.9927 | 1152 | 71 | 1146 | 5 | 5 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.0233 | 98.3380 | 99.7183 | 57.9882 | 355 | 6 | 354 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.4499 | 66.9661 | 91.8256 | 57.9851 | 671 | 331 | 674 | 60 | 42 | 70.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.0297 | 94.2308 | 100.0000 | 57.9832 | 49 | 3 | 50 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 87.4172 | 77.6471 | 100.0000 | 57.9832 | 66 | 19 | 50 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 84.0573 | 78.4689 | 90.5028 | 57.9812 | 164 | 45 | 162 | 17 | 12 | 70.5882 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 48.9065 | 45.5178 | 52.8403 | 57.9746 | 8043 | 9627 | 8074 | 7206 | 5882 | 81.6264 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 48.9065 | 45.5178 | 52.8403 | 57.9746 | 8043 | 9627 | 8074 | 7206 | 5882 | 81.6264 | |
| gduggal-bwafb | INDEL | D1_5 | HG002complexvar | homalt | 98.4856 | 98.5186 | 98.4525 | 57.9745 | 10441 | 157 | 10434 | 164 | 151 | 92.0732 | |
| anovak-vg | INDEL | D1_5 | HG002complexvar | homalt | 92.9611 | 95.2727 | 90.7590 | 57.9711 | 10097 | 501 | 10224 | 1041 | 840 | 80.6916 | |
| eyeh-varpipe | SNP | ti | map_siren | * | 99.4355 | 99.7967 | 99.0768 | 57.9702 | 100151 | 204 | 97874 | 912 | 55 | 6.0307 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7781 | 99.9671 | 99.5898 | 57.9684 | 6070 | 2 | 6070 | 25 | 24 | 96.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.6681 | 94.0715 | 99.4120 | 57.9684 | 14503 | 914 | 14541 | 86 | 84 | 97.6744 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3771 | 99.1429 | 99.6124 | 57.9633 | 1041 | 9 | 1028 | 4 | 1 | 25.0000 | |