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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1070 1071 1072 1073 1074 1075 1076 1077 1078 ... 1720 1721 » 53651-53700 / 86044 show all
ckim-dragen	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.3885	93.5484	99.4065	59.1515	319	22	335	2	2	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7835	99.7835	99.7835	59.1512	461	1	461	1	1	100.0000
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	het	80.6922	97.5309	68.8119	59.1507	395	10	278	126	121	96.0317
cchapple-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.9542	98.7939	99.1150	59.1505	901	11	896	8	8	100.0000
hfeng-pmm2	INDEL	D6_15	*	het	98.1073	97.3775	98.8481	59.1502	11288	304	11242	131	113	86.2595
gduggal-snapplat	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	86.1010	77.3614	97.0668	59.1479	3571	1045	3574	108	9	8.3333
gduggal-bwaplat	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	82.8275	71.3902	98.6286	59.1429	5320	2132	5322	74	14	18.9189
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	43.9656	31.1283	74.8222	59.1398	1087	2405	1052	354	57	16.1017
ltrigg-rtg1	SNP	tv	tech_badpromoters	het	92.9577	100.0000	86.8421	59.1398	33	0	33	5	0	0.0000
hfeng-pmm1	INDEL	D1_5	HG002compoundhet	hetalt	97.2704	94.7044	99.9793	59.1395	9675	541	9675	2	1	50.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6891	99.3802	100.0000	59.1393	962	6	959	0	0
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	94.6966	92.5757	96.9171	59.1377	2232	179	2232	71	67	94.3662
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	93.1299	89.8491	96.6594	59.1348	4346	491	4456	154	72	46.7532
ciseli-custom	SNP	ti	map_l100_m1_e0	homalt	90.9965	90.6459	91.3498	59.1340	16280	1680	16242	1538	1227	79.7789
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	86.7164	95.8976	79.1397	59.1322	17088	731	18434	4859	4632	95.3283
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7917	99.5842	100.0000	59.1297	479	2	479	0	0
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	83.0571	91.0366	76.3636	59.1295	5322	524	5292	1638	1616	98.6569
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	83.0571	91.0366	76.3636	59.1295	5322	524	5292	1638	1616	98.6569
egarrison-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	93.4420	91.1431	95.8599	59.1279	1204	117	1204	52	39	75.0000
ndellapenna-hhga	SNP	ti	map_l100_m1_e0	homalt	99.7965	99.6659	99.9274	59.1233	17900	60	17900	13	13	100.0000
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	68.6126	67.6959	69.5544	59.1226	3464	1653	5010	2193	1686	76.8810
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	90.6103	83.5498	98.9744	59.1195	386	76	386	4	4	100.0000
hfeng-pmm2	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0524	98.2806	99.8365	59.1178	34810	609	34800	57	5	8.7719
egarrison-hhga	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3357	98.9921	99.6817	59.1116	35062	357	35070	112	48	42.8571
eyeh-varpipe	SNP	*	map_siren	*	98.7590	99.8051	97.7347	59.1101	145943	285	141168	3272	81	2.4756
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	59.1065	120	2	119	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2948	99.3780	99.2118	59.1033	8308	52	8308	66	66	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2948	99.3780	99.2118	59.1033	8308	52	8308	66	66	100.0000
cchapple-custom	SNP	tv	map_l100_m0_e0	homalt	98.2136	96.4899	100.0000	59.1024	3711	135	3709	0	0
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	85.6204	89.4628	82.0945	59.1015	866	102	2728	595	253	42.5210
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.6534	99.7468	97.5836	59.0978	1576	4	1575	39	7	17.9487
ckim-dragen	INDEL	D6_15	HG002complexvar	het	99.2569	98.9103	99.6060	59.0976	3086	34	3034	12	10	83.3333
ghariani-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	55.0794	89.0909	39.8618	59.0952	343	42	346	522	495	94.8276
dgrover-gatk	INDEL	*	*	homalt	99.5819	99.8906	99.2752	59.0938	125035	137	125045	913	890	97.4808
ghariani-varprowl	INDEL	I16_PLUS	func_cds	het	88.8889	88.8889	88.8889	59.0909	8	1	8	1	1	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	59.0909	45	0	45	0	0
hfeng-pmm1	INDEL	I16_PLUS	func_cds	het	100.0000	100.0000	100.0000	59.0909	9	0	9	0	0
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	17.2414	10.2041	55.5556	59.0909	5	44	5	4	3	75.0000
ltrigg-rtg2	SNP	*	tech_badpromoters	het	97.4684	100.0000	95.0617	59.0909	77	0	77	4	0	0.0000
jpowers-varprowl	INDEL	D6_15	tech_badpromoters	het	84.2105	80.0000	88.8889	59.0909	8	2	8	1	1	100.0000
hfeng-pmm2	INDEL	I16_PLUS	func_cds	het	100.0000	100.0000	100.0000	59.0909	9	0	9	0	0
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	67.4676	51.9231	96.2963	59.0909	27	25	52	2	2	100.0000
astatham-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5490	99.1830	99.9177	59.0909	1214	10	1214	1	1	100.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.7078	96.2897	99.1684	59.0884	8097	312	8109	68	56	82.3529
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	81.5062	79.9189	83.1579	59.0870	394	99	395	80	78	97.5000
dgrover-gatk	INDEL	D16_PLUS	HG002compoundhet	het	89.2587	99.2593	81.0888	59.0856	402	3	283	66	63	95.4545
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	74.0214	58.9765	99.3707	59.0788	2086	1451	12474	79	71	89.8734
dgrover-gatk	INDEL	I1_5	*	*	99.5294	99.3841	99.6753	59.0782	149736	928	149786	488	385	78.8934
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	84.7458	91.1458	79.1855	59.0741	175	17	175	46	43	93.4783
ckim-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5862	99.7647	99.4083	59.0715	17809	42	17808	106	7	6.6038

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