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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1069 1070 1071 1072 1073 1074 1075 1076 1077 ... 1720 1721 » 53601-53650 / 86044 show all
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	59.4059	43.6893	92.7835	59.2437	90	116	90	7	7	100.0000
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0769	99.9113	98.2563	59.2395	1127	1	1127	20	10	50.0000
astatham-gatk	INDEL	I6_15	*	het	98.9793	98.7242	99.2358	59.2368	9905	128	9869	76	54	71.0526
hfeng-pmm1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1579	98.4076	99.9197	59.2367	34855	564	34845	28	5	17.8571
gduggal-bwafb	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3797	99.1386	99.6220	59.2352	20025	174	20030	76	54	71.0526
hfeng-pmm3	INDEL	I1_5	*	het	99.7016	99.5433	99.8604	59.2337	78680	361	78661	110	51	46.3636
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4660	99.4311	99.5010	59.2336	19749	113	19742	99	60	60.6061
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	94.8283	92.7831	96.9658	59.2331	2237	174	2237	70	66	94.2857
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	59.2308	52	0	53	0	0
gduggal-snapvard	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	92.1810	97.5637	87.3613	59.2270	17740	443	17557	2540	107	4.2126
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	87.7692	97.8411	79.5775	59.2240	13460	297	13899	3567	3388	94.9818
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	87.7692	97.8411	79.5775	59.2240	13460	297	13899	3567	3388	94.9818
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7463	99.4939	100.0000	59.2175	1376	7	1376	0	0
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	96.1110	99.6849	92.7845	59.2169	9491	30	9490	738	734	99.4580
eyeh-varpipe	INDEL	D1_5	*	homalt	95.4519	99.1150	92.0499	59.2107	48493	433	48444	4184	4111	98.2553
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	95.9707	98.1273	93.9068	59.2105	262	5	262	17	17	100.0000
gduggal-bwavard	INDEL	D6_15	func_cds	het	93.3333	96.5517	90.3226	59.2105	28	1	28	3	3	100.0000
bgallagher-sentieon	SNP	tv	map_l100_m1_e0	homalt	99.7786	99.6572	99.9002	59.2105	9012	31	9012	9	6	66.6667
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.7382	91.0643	98.7211	59.2029	3628	356	3628	47	39	82.9787
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5490	99.1830	99.9177	59.2008	1214	10	1214	1	1	100.0000
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	44.1767	33.5366	64.7059	59.2000	55	109	66	36	29	80.5556
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	94.7522	90.0277	100.0000	59.1990	325	36	326	0	0
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2666	99.8474	98.6925	59.1977	3925	6	3925	52	1	1.9231
rpoplin-dv42	INDEL	D6_15	HG002complexvar	het	97.7459	97.7564	97.7354	59.1947	3050	70	3021	70	62	88.5714
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	12.8639	7.7236	38.4615	59.1928	19	227	35	56	6	10.7143
qzeng-custom	INDEL	D16_PLUS	HG002complexvar	het	88.4674	95.9350	82.0784	59.1925	1062	45	1319	288	45	15.6250
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	91.6227	96.5092	87.2072	59.1912	470	17	484	71	70	98.5915
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	88.4682	80.1441	98.7217	59.1894	1001	248	1004	13	6	46.1538
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	88.4682	80.1441	98.7217	59.1894	1001	248	1004	13	6	46.1538
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	94.5713	92.7921	96.4200	59.1883	1223	95	1212	45	44	97.7778
ciseli-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	95.3321	99.2576	91.7054	59.1877	10027	75	10072	911	306	33.5895
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	88.9231	98.9002	80.7746	59.1871	1169	13	1168	278	276	99.2806
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	homalt	94.0594	93.1373	95.0000	59.1837	95	7	95	5	5	100.0000
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	43.5045	31.1688	72.0000	59.1837	144	318	144	56	49	87.5000
ltrigg-rtg2	SNP	ti	map_l150_m1_e0	het	98.1622	96.5077	99.8745	59.1812	11938	432	11940	15	1	6.6667
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5068	99.4678	99.5459	59.1769	17756	95	17755	81	6	7.4074
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	86.4900	97.9500	77.4308	59.1746	2389	50	2405	701	19	2.7104
astatham-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	83.2298	72.8261	97.1014	59.1716	67	25	67	2	1	50.0000
gduggal-snapplat	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	93.7369	88.2556	99.9442	59.1703	5373	715	5371	3	0	0.0000
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	97.3244	99.6011	95.1494	59.1637	3995	16	3884	198	12	6.0606
gduggal-snapvard	INDEL	I16_PLUS	HG002complexvar	*	1.7978	0.9167	46.1538	59.1623	12	1297	216	252	147	58.3333
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	95.2063	96.6159	93.8373	59.1611	1142	40	1142	75	73	97.3333
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	52.9384	36.4654	96.5577	59.1585	3388	5903	3899	139	129	92.8058
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	52.9384	36.4654	96.5577	59.1585	3388	5903	3899	139	129	92.8058
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.4217	95.9190	98.9723	59.1578	6064	258	6067	63	48	76.1905
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.4217	95.9190	98.9723	59.1578	6064	258	6067	63	48	76.1905
jlack-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8161	99.8396	99.7926	59.1577	10581	17	10588	22	21	95.4545
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	85.1694	82.0755	88.5057	59.1549	87	19	462	60	43	71.6667
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8842	99.9226	99.8459	59.1543	3875	3	3887	6	2	33.3333
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.3867	94.8287	97.9968	59.1527	3044	166	3033	62	60	96.7742

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