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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1068 1069 1070 1071 1072 1073 1074 1075 1076 ... 1720 1721 » 53551-53600 / 86044 show all
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	93.6709	88.0952	100.0000	59.3407	74	10	74	0	0
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6389	99.6975	99.5803	59.3397	17797	54	17796	75	5	6.6667
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9357	99.9228	99.9485	59.3344	3884	3	3884	2	2	100.0000
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.3029	95.1201	97.5155	59.3306	1267	65	1256	32	19	59.3750
asubramanian-gatk	INDEL	*	*	hetalt	95.6373	92.5665	98.9188	59.3274	23361	1876	23605	258	236	91.4729
ckim-gatk	INDEL	I1_5	*	*	99.3427	99.1491	99.5371	59.3239	149382	1282	149430	695	401	57.6978
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	86.2069	75.7576	100.0000	59.3220	25	8	24	0	0
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9614	99.9743	99.9486	59.3220	3886	1	3886	2	2	100.0000
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	95.7854	98.9446	92.8218	59.3152	375	4	375	29	29	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.4427	96.5699	96.3158	59.3148	366	13	366	14	14	100.0000
mlin-fermikit	SNP	ti	map_l150_m0_e0	homalt	53.2251	42.7381	70.5320	59.3142	1180	1581	1180	493	459	93.1034
ltrigg-rtg2	SNP	ti	map_l125_m0_e0	*	98.3571	96.8735	99.8869	59.3116	12363	399	12363	14	4	28.5714
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.1453	98.3051	100.0000	59.3103	58	1	59	0	0
ltrigg-rtg1	SNP	*	map_l100_m2_e1	*	99.3071	98.8520	99.7664	59.3097	73879	858	73876	173	38	21.9653
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7333	100.0000	99.4681	59.3074	374	0	374	2	1	50.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.8419	99.1062	98.5790	59.3072	7318	66	7284	105	100	95.2381
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.1944	96.7449	99.6880	59.3016	1278	43	1278	4	3	75.0000
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	93.2373	98.5618	88.4586	59.3016	1165	17	1165	152	150	98.6842
gduggal-snapplat	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	92.4376	86.6059	99.1115	59.3014	9783	1513	9816	88	22	25.0000
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9357	99.9228	99.9485	59.3004	3884	3	3884	2	2	100.0000
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	51.5950	42.4685	65.7179	59.2998	2123	2876	2101	1096	789	71.9891
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	51.5950	42.4685	65.7179	59.2998	2123	2876	2101	1096	789	71.9891
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	48.4456	45.3883	51.9444	59.2990	374	450	374	346	337	97.3988
ckim-dragen	INDEL	D6_15	*	homalt	97.3161	99.7471	95.0008	59.2976	6310	16	6309	332	329	99.0964
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	40.7567	52.0900	33.4737	59.2973	162	149	159	316	303	95.8861
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0126	98.9729	99.0524	59.2954	19658	204	19651	188	96	51.0638
rpoplin-dv42	INDEL	*	*	het	99.0459	99.3340	98.7595	59.2937	192840	1293	192749	2421	2250	92.9368
astatham-gatk	SNP	tv	map_l100_m1_e0	homalt	99.5729	99.2591	99.8887	59.2933	8976	67	8976	10	6	60.0000
jlack-gatk	INDEL	D6_15	HG002complexvar	het	98.1096	98.1090	98.1101	59.2917	3061	59	3011	58	40	68.9655
gduggal-snapvard	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.5877	98.1945	98.9841	59.2905	10714	197	10620	109	34	31.1927
jli-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9228	99.9228	99.9228	59.2856	3884	3	3884	3	2	66.6667
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	97.7740	98.0000	97.5490	59.2814	196	4	199	5	2	40.0000
jpowers-varprowl	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	57.3405	87.8864	42.5514	59.2810	4919	678	4950	6683	6644	99.4164
jli-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	*	95.1996	94.1441	96.2791	59.2803	209	13	207	8	6	75.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.9033	99.2281	98.5807	59.2778	7327	57	7293	105	100	95.2381
egarrison-hhga	INDEL	D6_15	HG002complexvar	homalt	95.9329	97.8614	94.0789	59.2766	1144	25	1144	72	43	59.7222
ltrigg-rtg1	SNP	*	map_l100_m2_e0	*	99.3059	98.8413	99.7748	59.2762	73107	857	73104	165	38	23.0303
cchapple-custom	INDEL	D16_PLUS	HG002complexvar	homalt	96.3174	96.1938	96.4413	59.2754	278	11	271	10	9	90.0000
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	90.5202	96.8720	84.9501	59.2685	3066	99	3065	543	542	99.8158
bgallagher-sentieon	SNP	ti	map_l100_m0_e0	homalt	99.6648	99.4469	99.8837	59.2653	7731	43	7731	9	7	77.7778
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.7619	98.0695	95.4887	59.2649	254	5	254	12	10	83.3333
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.5124	96.0784	98.9899	59.2593	98	4	98	1	1	100.0000
ckim-dragen	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	59.2593	33	0	33	0	0
jpowers-varprowl	INDEL	*	tech_badpromoters	homalt	80.0000	66.6667	100.0000	59.2593	22	11	22	0	0
ltrigg-rtg1	INDEL	D16_PLUS	HG002compoundhet	homalt	73.6842	87.5000	63.6364	59.2593	7	1	7	4	4	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	73.0080	57.7670	99.1736	59.2593	119	87	120	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	tech_badpromoters	*	100.0000	100.0000	100.0000	59.2593	22	0	22	0	0
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8198	99.9742	99.6658	59.2542	3877	1	3877	13	0	0.0000
asubramanian-gatk	INDEL	I1_5	*	*	99.0996	98.6108	99.5933	59.2515	148571	2093	148648	607	454	74.7941
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	97.1797	95.6882	98.7185	59.2515	2308	104	2311	30	19	63.3333

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