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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1067 1068 1069 1070 1071 1072 1073 1074 1075 ... 1720 1721 » 53501-53550 / 86044 show all
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	91.6563	86.8570	97.0171	59.4271	26474	4006	42997	1322	971	73.4493
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5424	99.7679	99.3178	59.4259	3869	9	3931	27	1	3.7037
egarrison-hhga	INDEL	D1_5	*	homalt	99.1875	99.1927	99.1824	59.4207	48531	395	48522	400	203	50.7500
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	92.7198	89.2857	96.4286	59.4203	25	3	27	1	0	0.0000
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	36.6412	23.3010	85.7143	59.4203	48	158	48	8	8	100.0000
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.1242	97.2222	99.0431	59.4175	210	6	207	2	1	50.0000
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	95.6799	93.0581	98.4538	59.4166	12802	955	19039	299	108	36.1204
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	95.6799	93.0581	98.4538	59.4166	12802	955	19039	299	108	36.1204
jli-custom	INDEL	D1_5	HG002complexvar	homalt	99.9010	99.9151	99.8868	59.4114	10589	9	10593	12	10	83.3333
gduggal-bwaplat	INDEL	I1_5	HG002complexvar	*	92.5060	86.7938	99.0230	59.4097	28957	4406	28886	285	203	71.2281
ckim-dragen	INDEL	D1_5	*	het	99.5957	99.7625	99.4294	59.4097	87366	208	87308	501	64	12.7745
qzeng-custom	SNP	ti	map_l100_m2_e1	homalt	88.0999	79.0797	99.4428	59.4081	14625	3869	14457	81	75	92.5926
jpowers-varprowl	INDEL	I16_PLUS	*	*	56.3839	48.9258	66.5246	59.4066	3120	3257	3122	1571	1564	99.5544
gduggal-bwavard	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	98.0609	96.5649	99.6040	59.4051	506	18	503	2	2	100.0000
ndellapenna-hhga	SNP	ti	map_l100_m0_e0	homalt	99.6905	99.4469	99.9354	59.4017	7731	43	7731	5	5	100.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	92.4298	90.2778	94.6869	59.3991	520	56	499	28	9	32.1429
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.0557	90.2945	95.9912	59.3990	2177	234	2179	91	83	91.2088
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	71.6758	63.5678	82.1546	59.3969	10619	6086	3241	704	487	69.1761
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	71.6758	63.5678	82.1546	59.3969	10619	6086	3241	704	487	69.1761
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	95.5603	97.8355	93.3884	59.3960	452	10	452	32	19	59.3750
astatham-gatk	INDEL	D6_15	HG002complexvar	het	99.0140	98.8462	99.1825	59.3945	3084	36	3033	25	19	76.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7288	99.5616	99.8965	59.3927	3861	17	3861	4	0	0.0000
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.6009	92.0821	99.3994	59.3902	314	27	331	2	2	100.0000
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9357	99.9228	99.9485	59.3897	3884	3	3884	2	2	100.0000
raldana-dualsentieon	INDEL	D6_15	*	het	97.8785	97.4810	98.2792	59.3884	11300	292	11251	197	187	94.9239
ckim-dragen	INDEL	I6_15	HG002complexvar	het	99.2082	98.6412	99.7818	59.3866	2323	32	2286	5	4	80.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	59.3857	120	2	119	0	0
ckim-vqsr	INDEL	I1_5	*	*	99.3579	99.0515	99.6662	59.3791	149235	1429	149282	500	397	79.4000
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8713	99.7942	99.9485	59.3783	3879	8	3879	2	2	100.0000
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	21.6364	12.9630	65.3846	59.3750	14	94	17	9	9	100.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	8.1356	4.2553	92.3077	59.3750	8	180	12	1	1	100.0000
hfeng-pmm3	INDEL	I1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	59.3750	13	0	13	0	0
hfeng-pmm1	INDEL	I1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	59.3750	13	0	13	0	0
ckim-dragen	INDEL	I1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	59.3750	13	0	13	0	0
ndellapenna-hhga	INDEL	I6_15	tech_badpromoters	*	100.0000	100.0000	100.0000	59.3750	13	0	13	0	0
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	50.2462	41.8069	62.9545	59.3735	2684	3736	6614	3892	2524	64.8510
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	50.2462	41.8069	62.9545	59.3735	2684	3736	6614	3892	2524	64.8510
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5238	99.0521	100.0000	59.3712	1672	16	1680	0	0
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	77.5000	97.6378	64.2487	59.3684	124	3	124	69	69	100.0000
cchapple-custom	INDEL	D16_PLUS	HG002complexvar	het	95.3100	93.9476	96.7125	59.3663	1040	67	1265	43	36	83.7209
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	96.8600	98.1613	95.5927	59.3604	6620	124	6572	303	63	20.7921
cchapple-custom	INDEL	D16_PLUS	*	homalt	98.3125	98.3452	98.2800	59.3539	1664	28	1657	29	25	86.2069
bgallagher-sentieon	INDEL	D6_15	HG002complexvar	het	98.9817	98.8462	99.1176	59.3518	3084	36	3033	27	21	77.7778
ltrigg-rtg2	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4910	99.5737	99.4084	59.3516	27560	118	27559	164	14	8.5366
jli-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4256	99.8900	98.9654	59.3515	3634	4	3635	38	37	97.3684
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7333	100.0000	99.4681	59.3514	374	0	374	2	1	50.0000
cchapple-custom	INDEL	D16_PLUS	HG002complexvar	*	94.5754	92.5746	96.6646	59.3502	1521	122	1536	53	45	84.9057
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.5359	99.7766	99.2963	59.3496	2680	6	2681	19	1	5.2632
anovak-vg	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.6046	94.9346	96.2841	59.3488	1162	62	1166	45	34	75.5556
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	68.3908	54.5894	91.5323	59.3443	226	188	227	21	15	71.4286

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