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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1066 1067 1068 1069 1070 1071 1072 1073 1074 ... 1720 1721 » 53451-53500 / 86044 show all
gduggal-bwaplat	INDEL	D1_5	HG002complexvar	het	91.4572	85.1047	98.8344	59.4901	17672	3093	17637	208	101	48.5577
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8504	99.8290	99.8718	59.4899	7007	12	7011	9	6	66.6667
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4796	99.6391	99.3205	59.4883	2485	9	2485	17	0	0.0000
ckim-dragen	INDEL	I6_15	*	het	98.9990	98.7043	99.2956	59.4838	9903	130	9867	70	31	44.2857
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	56.2018	39.2727	98.7842	59.4828	324	501	325	4	4	100.0000
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	56.2018	39.2727	98.7842	59.4828	324	501	325	4	4	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.5354	97.7762	99.3066	59.4807	8222	187	8306	58	19	32.7586
asubramanian-gatk	INDEL	I1_5	func_cds	het	98.3607	100.0000	96.7742	59.4771	59	0	60	2	0	0.0000
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9871	100.0000	99.9743	59.4747	3887	0	3887	1	1	100.0000
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	homalt	99.7949	99.6668	99.9233	59.4718	18248	61	18248	14	12	85.7143
ltrigg-rtg2	SNP	*	map_l125_m0_e0	*	98.2838	96.7501	99.8669	59.4717	18755	630	18753	25	4	16.0000
ckim-gatk	INDEL	D6_15	HG002complexvar	het	99.0142	98.9423	99.0862	59.4709	3087	33	3036	28	22	78.5714
astatham-gatk	SNP	ti	map_l100_m0_e0	homalt	99.3534	98.8294	99.8830	59.4667	7683	91	7683	9	8	88.8889
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	92.6668	94.9700	90.4727	59.4634	1265	67	1244	131	94	71.7557
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	86.3847	99.0570	76.5871	59.4598	2416	23	2437	745	18	2.4161
ghariani-varprowl	SNP	tv	tech_badpromoters	*	96.5986	98.6111	94.6667	59.4595	71	1	71	4	1	25.0000
gduggal-snapvard	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	3.3520	1.8293	20.0000	59.4595	3	161	6	24	17	70.8333
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.4595	374	0	374	1	0	0.0000
raldana-dualsentieon	SNP	ti	map_l100_m0_e0	hetalt	96.5517	100.0000	93.3333	59.4595	14	0	14	1	1	100.0000
ckim-dragen	INDEL	D16_PLUS	HG002compoundhet	het	93.6315	98.5185	89.2063	59.4595	399	6	281	34	31	91.1765
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	92.8571	100.0000	86.6667	59.4595	13	0	13	2	2	100.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.0691	97.8061	98.3336	59.4584	7222	162	7199	122	98	80.3279
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	89.2573	89.3506	89.1641	59.4561	344	41	864	105	76	72.3810
qzeng-custom	SNP	ti	map_l100_m2_e0	homalt	87.9965	78.9175	99.4361	59.4553	14449	3860	14284	81	75	92.5926
ltrigg-rtg1	INDEL	*	HG002compoundhet	*	95.1229	91.7957	98.7003	59.4533	27502	2458	27566	363	303	83.4711
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	93.4354	97.2868	89.8773	59.4527	251	7	293	33	32	96.9697
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	98.5396	99.3917	97.7019	59.4515	2941	18	2976	70	0	0.0000
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	76.9319	72.4891	81.9549	59.4512	498	189	1308	288	179	62.1528
bgallagher-sentieon	SNP	ti	map_l100_m2_e1	homalt	99.7943	99.6648	99.9241	59.4504	18432	62	18432	14	12	85.7143
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	93.3965	91.9097	94.9321	59.4498	28867	2541	29709	1586	1202	75.7881
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	93.3965	91.9097	94.9321	59.4498	28867	2541	29709	1586	1202	75.7881
jmaeng-gatk	INDEL	D6_15	HG002complexvar	het	98.8845	98.7179	99.0517	59.4483	3080	40	3029	29	25	86.2069
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3114	99.8797	98.7495	59.4453	2491	3	2527	32	0	0.0000
dgrover-gatk	INDEL	D6_15	HG002complexvar	het	99.0464	98.8782	99.2152	59.4430	3085	35	3034	24	18	75.0000
gduggal-bwafb	SNP	ti	map_siren	het	99.0568	99.3219	98.7930	59.4400	61959	423	61963	757	131	17.3052
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7333	100.0000	99.4681	59.4391	374	0	374	2	1	50.0000
ndellapenna-hhga	INDEL	D6_15	HG002complexvar	hetalt	66.5397	51.3327	94.5493	59.4388	520	493	451	26	23	88.4615
jpowers-varprowl	SNP	tv	map_siren	homalt	99.3790	99.3213	99.4367	59.4375	17123	117	17123	97	72	74.2268
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	97.3115	96.3071	98.3370	59.4348	15178	582	15020	254	229	90.1575
qzeng-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	75.8621	75.0000	76.7442	59.4340	6	2	33	10	5	50.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.4189	97.8723	96.9697	59.4335	736	16	736	23	23	100.0000
ndellapenna-hhga	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	81.1769	94.8227	70.9646	59.4330	1337	73	1442	590	557	94.4068
ckim-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5490	99.1830	99.9177	59.4324	1214	10	1214	1	1	100.0000
bgallagher-sentieon	INDEL	I6_15	HG002complexvar	het	99.2727	98.8535	99.6955	59.4318	2328	27	2292	7	6	85.7143
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3035	98.8131	99.7988	59.4317	16234	195	16370	33	3	9.0909
ltrigg-rtg1	SNP	ti	map_l100_m1_e0	homalt	99.8050	99.7216	99.8885	59.4316	17910	50	17910	20	20	100.0000
dgrover-gatk	INDEL	D1_5	*	het	99.7614	99.7979	99.7250	59.4296	87397	177	87406	241	125	51.8672
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	98.3471	97.3466	99.3684	59.4294	2348	64	2360	15	9	60.0000
ckim-gatk	INDEL	D16_PLUS	HG002compoundhet	het	88.7912	99.7531	80.0000	59.4286	404	1	284	71	68	95.7746
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	91.6563	86.8570	97.0171	59.4271	26474	4006	42997	1322	971	73.4493

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