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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1063 1064 1065 1066 1067 1068 1069 1070 1071 ... 1720 1721 » 53301-53350 / 86044 show all
ghariani-varprowl	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.2430	99.5309	96.9881	59.7341	11032	52	11045	343	3	0.8746
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.0566	99.8141	96.3599	59.7337	3759	7	3759	142	138	97.1831
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.0566	99.8141	96.3599	59.7337	3759	7	3759	142	138	97.1831
ltrigg-rtg1	SNP	tv	map_l100_m2_e0	*	99.2918	98.8495	99.7380	59.7315	24745	288	24740	65	9	13.8462
ckim-dragen	SNP	tv	map_l100_m0_e0	homalt	99.4789	99.2720	99.6867	59.7308	3818	28	3818	12	10	83.3333
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.3469	96.9970	97.6994	59.7282	1292	40	1274	30	17	56.6667
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	96.3984	95.9444	96.8568	59.7281	828	35	832	27	25	92.5926
gduggal-bwaplat	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	88.3800	79.7888	99.0444	59.7268	14508	3675	14511	140	39	27.8571
qzeng-custom	SNP	tv	map_l100_m1_e0	homalt	87.4842	78.2705	99.1566	59.7237	7078	1965	7054	60	60	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	94.5750	99.7860	89.8811	59.7231	2798	6	2798	315	314	99.6825
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	32.5074	80.0000	20.3980	59.7194	40	10	41	160	156	97.5000
mlin-fermikit	SNP	tv	map_l100_m0_e0	het	56.5874	39.7258	98.3185	59.7124	2869	4353	2865	49	0	0.0000
jli-custom	SNP	*	map_l100_m2_e0	homalt	99.7944	99.6512	99.9381	59.7123	27427	96	27427	17	16	94.1176
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	69.8290	73.2103	66.7462	59.7115	992	363	839	418	413	98.8038
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8348	99.6884	99.9816	59.7111	10877	34	10874	2	1	50.0000
dgrover-gatk	INDEL	I6_15	*	het	99.0704	98.9435	99.1977	59.7099	9927	106	9891	80	53	66.2500
ciseli-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	50.1585	49.1836	51.1729	59.7079	7892	8154	7919	7556	5150	68.1578
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	51.8014	43.6913	63.6086	59.7043	419	540	416	238	213	89.4958
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	95.9157	96.0422	95.7895	59.7031	364	15	364	16	16	100.0000
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	90.9907	84.0382	99.1974	59.7025	616	117	618	5	2	40.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.3400	98.7394	99.9479	59.7020	3838	49	3838	2	2	100.0000
ckim-vqsr	INDEL	D16_PLUS	HG002compoundhet	het	88.8043	99.2593	80.3419	59.7015	402	3	282	69	67	97.1014
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	92.1739	86.8852	98.1481	59.7015	53	8	53	1	0	0.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5315	99.4915	99.5716	59.7014	19761	101	19754	85	47	55.2941
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6283	99.2593	100.0000	59.6970	268	2	266	0	0
jli-custom	SNP	*	map_l100_m2_e1	homalt	99.7946	99.6510	99.9387	59.6958	27699	97	27699	17	16	94.1176
dgrover-gatk	INDEL	I6_15	HG002complexvar	het	99.4230	99.0658	99.7827	59.6952	2333	22	2296	5	4	80.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.0291	98.0769	100.0000	59.6899	51	1	52	0	0
rpoplin-dv42	INDEL	I16_PLUS	HG002complexvar	het	93.4882	90.9774	96.1415	59.6889	605	60	598	24	22	91.6667
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	97.7598	99.6310	95.9575	59.6872	2430	9	2350	99	7	7.0707
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.9161	92.6686	99.3994	59.6852	316	25	331	2	2	100.0000
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	86.8556	84.1808	89.7059	59.6838	149	28	183	21	20	95.2381
gduggal-bwafb	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	82.8200	73.8119	94.3324	59.6824	2982	1058	5892	354	254	71.7514
jmaeng-gatk	INDEL	I1_5	*	*	99.2409	99.0383	99.4444	59.6817	149215	1449	149263	834	391	46.8825
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7411	99.4835	100.0000	59.6808	963	5	960	0	0
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.4618	99.9203	95.1213	59.6779	3763	3	3763	193	190	98.4456
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.4618	99.9203	95.1213	59.6779	3763	3	3763	193	190	98.4456
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	97.0297	94.2308	100.0000	59.6774	49	3	50	0	0
gduggal-bwaplat	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	44.4444	28.9157	96.0000	59.6774	24	59	24	1	1	100.0000
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	93.3712	87.5666	100.0000	59.6774	1972	280	1975	0	0
dgrover-gatk	SNP	tv	map_l100_m1_e0	homalt	99.6730	99.4360	99.9111	59.6774	8992	51	8992	8	5	62.5000
ghariani-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	43.4757	29.7973	80.3688	59.6728	2837	6684	2833	692	587	84.8266
asubramanian-gatk	INDEL	D16_PLUS	HG002compoundhet	het	87.8383	97.0370	80.2326	59.6717	393	12	276	68	64	94.1176
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	62.0666	45.8824	95.8904	59.6685	39	46	70	3	3	100.0000
hfeng-pmm1	INDEL	*	HG002compoundhet	*	94.8334	92.5834	97.1953	59.6665	27738	2222	27620	797	774	97.1142
ckim-vqsr	INDEL	I6_15	HG002complexvar	het	99.2942	98.8110	99.7821	59.6661	2327	28	2290	5	4	80.0000
rpoplin-dv42	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	98.3437	97.5410	99.1597	59.6610	119	3	118	1	0	0.0000
egarrison-hhga	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	94.4183	93.3511	95.5102	59.6597	702	50	702	33	22	66.6667
raldana-dualsentieon	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.1161	96.5935	99.6875	59.6596	1276	45	1276	4	3	75.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	93.1507	90.6667	95.7746	59.6591	68	7	68	3	2	66.6667

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