PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51751-51800 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.6617 | 94.2604 | 99.1884 | 62.0692 | 5009 | 305 | 5011 | 41 | 34 | 82.9268 | |
| gduggal-bwavard | INDEL | I6_15 | tech_badpromoters | het | 77.7778 | 100.0000 | 63.6364 | 62.0690 | 7 | 0 | 7 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | tech_badpromoters | homalt | 91.6667 | 84.6154 | 100.0000 | 62.0690 | 11 | 2 | 11 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 63.5783 | 86.5217 | 50.2525 | 62.0690 | 199 | 31 | 199 | 197 | 181 | 91.8782 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.2785 | 70.6522 | 98.4848 | 62.0690 | 65 | 27 | 65 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 82.0120 | 84.6300 | 79.5511 | 62.0624 | 446 | 81 | 319 | 82 | 60 | 73.1707 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002complexvar | hetalt | 84.1254 | 73.6713 | 98.0371 | 62.0604 | 901 | 322 | 899 | 18 | 17 | 94.4444 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2012 | 98.4859 | 99.9268 | 62.0594 | 1366 | 21 | 1366 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.7867 | 94.2786 | 99.4318 | 62.0564 | 2274 | 138 | 2275 | 13 | 7 | 53.8462 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.0854 | 93.2480 | 96.9966 | 62.0553 | 3715 | 269 | 3714 | 115 | 105 | 91.3043 | |
| qzeng-custom | INDEL | I16_PLUS | * | het | 85.2063 | 89.5879 | 81.2333 | 62.0542 | 2435 | 283 | 2740 | 633 | 156 | 24.6445 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 67.4387 | 82.0937 | 57.2234 | 62.0538 | 1788 | 390 | 1624 | 1214 | 1194 | 98.3526 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.8059 | 94.2371 | 99.5186 | 62.0495 | 2273 | 139 | 2274 | 11 | 7 | 63.6364 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.3899 | 99.7736 | 97.0441 | 62.0464 | 11458 | 26 | 11458 | 349 | 339 | 97.1347 | |
| astatham-gatk | SNP | tv | map_siren | * | 92.9445 | 86.9192 | 99.8674 | 62.0464 | 39922 | 6008 | 39914 | 53 | 21 | 39.6226 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.3212 | 98.9623 | 95.7336 | 62.0458 | 1812 | 19 | 1840 | 82 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.5231 | 98.6023 | 94.5298 | 62.0425 | 12346 | 175 | 12304 | 712 | 693 | 97.3315 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.4668 | 93.9469 | 99.1255 | 62.0415 | 2266 | 146 | 2267 | 20 | 13 | 65.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.2498 | 93.8518 | 98.7735 | 62.0410 | 7892 | 517 | 7892 | 98 | 83 | 84.6939 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.8802 | 99.4227 | 90.7347 | 62.0390 | 2239 | 13 | 2223 | 227 | 39 | 17.1806 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1424 | 95.1756 | 99.1922 | 62.0377 | 6017 | 305 | 6017 | 49 | 41 | 83.6735 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1424 | 95.1756 | 99.1922 | 62.0377 | 6017 | 305 | 6017 | 49 | 41 | 83.6735 | |
| gduggal-bwafb | SNP | * | tech_badpromoters | het | 96.8553 | 100.0000 | 93.9024 | 62.0370 | 77 | 0 | 77 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.4411 | 88.2459 | 99.2862 | 62.0370 | 15158 | 2019 | 15162 | 109 | 22 | 20.1835 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6954 | 99.4790 | 99.9128 | 62.0351 | 3437 | 18 | 3437 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6073 | 99.7455 | 99.4695 | 62.0342 | 784 | 2 | 750 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8726 | 99.7455 | 100.0000 | 62.0339 | 784 | 2 | 784 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l100_m0_e0 | homalt | 99.4451 | 99.1253 | 99.7670 | 62.0330 | 7706 | 68 | 7706 | 18 | 17 | 94.4444 | |
| egarrison-hhga | INDEL | I16_PLUS | * | * | 92.9799 | 90.2305 | 95.9020 | 62.0328 | 5754 | 623 | 5757 | 246 | 165 | 67.0732 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9363 | 99.8728 | 100.0000 | 62.0276 | 785 | 1 | 824 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.5049 | 92.7033 | 98.4810 | 62.0192 | 775 | 61 | 778 | 12 | 8 | 66.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.4785 | 91.6667 | 97.4684 | 62.0192 | 77 | 7 | 77 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6109 | 99.2248 | 100.0000 | 62.0178 | 256 | 2 | 256 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8726 | 99.7455 | 100.0000 | 62.0155 | 784 | 2 | 784 | 0 | 0 | ||
| jlack-gatk | SNP | ti | map_siren | * | 98.3403 | 99.3782 | 97.3238 | 62.0115 | 99731 | 624 | 99716 | 2742 | 240 | 8.7527 | |
| ckim-isaac | SNP | ti | map_l100_m1_e0 | * | 80.0185 | 66.7647 | 99.8378 | 62.0110 | 32001 | 15930 | 32005 | 52 | 10 | 19.2308 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 65.8938 | 49.7835 | 97.4194 | 62.0098 | 230 | 232 | 302 | 8 | 8 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.8339 | 78.4314 | 35.4545 | 62.0035 | 80 | 22 | 78 | 142 | 137 | 96.4789 | |
| jlack-gatk | INDEL | D1_5 | func_cds | het | 95.0276 | 100.0000 | 90.5263 | 62.0000 | 85 | 0 | 86 | 9 | 0 | 0.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 21.3904 | 21.7391 | 21.0526 | 62.0000 | 5 | 18 | 8 | 30 | 16 | 53.3333 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.2975 | 18.9591 | 48.7288 | 61.9968 | 51 | 218 | 230 | 242 | 193 | 79.7521 | |
| ckim-vqsr | INDEL | I1_5 | * | het | 99.5998 | 99.5116 | 99.6881 | 61.9903 | 78655 | 386 | 78634 | 246 | 145 | 58.9431 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.7444 | 68.4857 | 84.7242 | 61.9892 | 502 | 231 | 599 | 108 | 100 | 92.5926 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 28.4651 | 25.7208 | 31.8650 | 61.9879 | 339 | 979 | 340 | 727 | 723 | 99.4498 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.3531 | 80.8576 | 90.3780 | 61.9856 | 528 | 125 | 526 | 56 | 54 | 96.4286 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4563 | 98.9185 | 100.0000 | 61.9839 | 1372 | 15 | 1372 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 11.7218 | 6.7568 | 44.2029 | 61.9835 | 45 | 621 | 61 | 77 | 10 | 12.9870 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 11.7218 | 6.7568 | 44.2029 | 61.9835 | 45 | 621 | 61 | 77 | 10 | 12.9870 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8204 | 92.5954 | 97.1549 | 61.9830 | 3689 | 295 | 3688 | 108 | 102 | 94.4444 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 61.3598 | 97.0699 | 44.8576 | 61.9828 | 5433 | 164 | 5465 | 6718 | 6663 | 99.1813 | |