PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51251-51300 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | * | map_l100_m2_e1 | homalt | 98.6017 | 97.3521 | 99.8837 | 62.7989 | 27060 | 736 | 26631 | 31 | 25 | 80.6452 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.5815 | 94.1667 | 99.1234 | 62.7989 | 1356 | 84 | 1357 | 12 | 7 | 58.3333 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | homalt | 98.6138 | 97.3767 | 99.8826 | 62.7969 | 26801 | 722 | 26381 | 31 | 25 | 80.6452 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5851 | 99.7230 | 99.4475 | 62.7955 | 360 | 1 | 360 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | homalt | 90.5022 | 89.8151 | 91.2000 | 62.7951 | 24965 | 2831 | 24852 | 2398 | 1881 | 78.4404 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.4822 | 58.5761 | 69.2853 | 62.7923 | 2131 | 1507 | 2249 | 997 | 694 | 69.6088 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.6812 | 95.9164 | 99.5121 | 62.7887 | 5097 | 217 | 5099 | 25 | 19 | 76.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | homalt | 99.8579 | 99.7870 | 99.9289 | 62.7872 | 18270 | 39 | 18270 | 13 | 13 | 100.0000 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | homalt | 82.4060 | 70.4991 | 99.1522 | 62.7863 | 8192 | 3428 | 8070 | 69 | 68 | 98.5507 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.1342 | 81.8421 | 97.8528 | 62.7854 | 311 | 69 | 319 | 7 | 7 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.1111 | 97.3783 | 98.8550 | 62.7841 | 260 | 7 | 259 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.7047 | 98.0586 | 97.3534 | 62.7778 | 8233 | 163 | 8203 | 223 | 199 | 89.2377 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | het | 98.7433 | 97.7681 | 99.7381 | 62.7777 | 18661 | 426 | 18663 | 49 | 7 | 14.2857 | |
| gduggal-bwaplat | SNP | tv | HG002compoundhet | het | 81.9141 | 84.1429 | 79.8002 | 62.7770 | 3932 | 741 | 3994 | 1011 | 84 | 8.3086 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | homalt | 98.9754 | 98.1605 | 99.8038 | 62.7769 | 7631 | 143 | 7631 | 15 | 10 | 66.6667 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | homalt | 99.8593 | 99.7891 | 99.9296 | 62.7744 | 18455 | 39 | 18455 | 13 | 13 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.8241 | 96.5164 | 95.1417 | 62.7732 | 471 | 17 | 470 | 24 | 20 | 83.3333 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7452 | 99.6183 | 99.8724 | 62.7730 | 783 | 3 | 783 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002complexvar | het | 94.8719 | 95.3930 | 94.3564 | 62.7718 | 1056 | 51 | 953 | 57 | 52 | 91.2281 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 89.5083 | 82.4047 | 97.9522 | 62.7700 | 281 | 60 | 287 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.1465 | 92.0399 | 98.4702 | 62.7698 | 4891 | 423 | 4892 | 76 | 70 | 92.1053 | |
| bgallagher-sentieon | INDEL | D6_15 | HG002complexvar | homalt | 99.0678 | 100.0000 | 98.1528 | 62.7696 | 1169 | 0 | 1169 | 22 | 21 | 95.4545 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 63.5899 | 54.1867 | 76.9418 | 62.7693 | 19828 | 16764 | 22724 | 6810 | 2991 | 43.9207 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0415 | 98.7261 | 99.3590 | 62.7685 | 155 | 2 | 155 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.7931 | 90.6667 | 97.1429 | 62.7660 | 68 | 7 | 68 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e1 | * | 62.9750 | 49.8289 | 85.5434 | 62.7659 | 8300 | 8357 | 8296 | 1402 | 1229 | 87.6605 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8483 | 99.7230 | 99.9740 | 62.7618 | 11520 | 32 | 11520 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8483 | 99.7230 | 99.9740 | 62.7618 | 11520 | 32 | 11520 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 90.7450 | 84.0340 | 98.6211 | 62.7612 | 23748 | 4512 | 23816 | 333 | 53 | 15.9159 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.2052 | 83.8323 | 100.0000 | 62.7604 | 140 | 27 | 143 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2631 | 87.6866 | 95.1439 | 62.7595 | 470 | 66 | 529 | 27 | 23 | 85.1852 | |
| jlack-gatk | SNP | tv | map_l100_m0_e0 | homalt | 99.0571 | 98.3359 | 99.7889 | 62.7592 | 3782 | 64 | 3782 | 8 | 5 | 62.5000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.9718 | 91.0394 | 99.2593 | 62.7586 | 254 | 25 | 268 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.9718 | 91.0394 | 99.2593 | 62.7586 | 254 | 25 | 268 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | * | hetalt | 97.1621 | 94.4975 | 99.9812 | 62.7564 | 10579 | 616 | 10637 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m1_e0 | het | 99.0732 | 98.3928 | 99.7631 | 62.7556 | 44630 | 729 | 44632 | 106 | 41 | 38.6792 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.8406 | 99.7106 | 99.9710 | 62.7500 | 3445 | 10 | 3445 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 72.9938 | 64.5494 | 83.9802 | 62.7497 | 1189 | 653 | 1190 | 227 | 214 | 94.2731 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 54.3046 | 38.5882 | 91.6201 | 62.7471 | 328 | 522 | 328 | 30 | 21 | 70.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.6645 | 97.8723 | 97.4576 | 62.7466 | 460 | 10 | 460 | 12 | 3 | 25.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 62.7451 | 19 | 1 | 19 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.4286 | 84.2105 | 100.0000 | 62.7451 | 16 | 3 | 19 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 10.1868 | 6.3158 | 26.3158 | 62.7451 | 6 | 89 | 5 | 14 | 2 | 14.2857 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | homalt | 99.3564 | 98.9759 | 99.7398 | 62.7443 | 11501 | 119 | 11501 | 30 | 27 | 90.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7101 | 99.5369 | 99.8839 | 62.7379 | 3439 | 16 | 3442 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.5277 | 86.8852 | 90.2335 | 62.7373 | 424 | 64 | 425 | 46 | 39 | 84.7826 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | het | 98.9362 | 97.8947 | 100.0000 | 62.7370 | 651 | 14 | 629 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.4497 | 95.7576 | 97.1519 | 62.7358 | 316 | 14 | 307 | 9 | 3 | 33.3333 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 91.5332 | 92.5926 | 90.4977 | 62.7319 | 200 | 16 | 200 | 21 | 15 | 71.4286 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 88.5850 | 80.2390 | 98.8688 | 62.7319 | 873 | 215 | 874 | 10 | 8 | 80.0000 | |