PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51051-51100 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I6_15 | HG002compoundhet | homalt | 18.5075 | 100.0000 | 10.1974 | 63.1068 | 31 | 0 | 31 | 273 | 272 | 99.6337 | |
| jli-custom | SNP | ti | map_l100_m0_e0 | * | 99.2096 | 98.8792 | 99.5422 | 63.1044 | 21527 | 244 | 21527 | 99 | 35 | 35.3535 | |
| jli-custom | SNP | * | map_l100_m2_e0 | * | 99.4726 | 99.3267 | 99.6190 | 63.1033 | 73466 | 498 | 73463 | 281 | 79 | 28.1139 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.3706 | 85.7143 | 97.8261 | 63.1016 | 144 | 24 | 135 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 43.4388 | 29.2157 | 84.6482 | 63.0999 | 447 | 1083 | 397 | 72 | 71 | 98.6111 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 43.4388 | 29.2157 | 84.6482 | 63.0999 | 447 | 1083 | 397 | 72 | 71 | 98.6111 | |
| hfeng-pmm2 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3792 | 98.9089 | 99.8541 | 63.0972 | 27376 | 302 | 27367 | 40 | 7 | 17.5000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3259 | 98.9526 | 99.7019 | 63.0961 | 17384 | 184 | 17391 | 52 | 20 | 38.4615 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2859 | 91.1304 | 99.8384 | 63.0944 | 4942 | 481 | 4944 | 8 | 5 | 62.5000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.2859 | 91.1304 | 99.8384 | 63.0944 | 4942 | 481 | 4944 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | SNP | ti | map_l100_m0_e0 | homalt | 98.3810 | 96.9900 | 99.8126 | 63.0879 | 7540 | 234 | 7457 | 14 | 11 | 78.5714 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.6237 | 98.6866 | 98.5609 | 63.0877 | 3231 | 43 | 3219 | 47 | 44 | 93.6170 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8994 | 99.2682 | 96.5678 | 63.0857 | 2713 | 20 | 2701 | 96 | 92 | 95.8333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.9231 | 95.7613 | 94.0995 | 63.0798 | 17396 | 770 | 17399 | 1091 | 598 | 54.8121 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.9231 | 95.7613 | 94.0995 | 63.0798 | 17396 | 770 | 17399 | 1091 | 598 | 54.8121 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7620 | 98.3607 | 99.1667 | 63.0769 | 120 | 2 | 119 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.1429 | 96.6825 | 97.6077 | 63.0742 | 204 | 7 | 204 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 59.0350 | 46.7546 | 80.0643 | 63.0729 | 1311 | 1493 | 1245 | 310 | 228 | 73.5484 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.6641 | 98.6641 | 98.6641 | 63.0726 | 517 | 7 | 517 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.3614 | 99.8289 | 98.8983 | 63.0673 | 1167 | 2 | 1167 | 13 | 12 | 92.3077 | |
| jli-custom | SNP | * | map_l100_m1_e0 | het | 99.2812 | 99.1159 | 99.4470 | 63.0672 | 44958 | 401 | 44955 | 250 | 62 | 24.8000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.4419 | 96.9415 | 81.3126 | 63.0649 | 729 | 23 | 731 | 168 | 160 | 95.2381 | |
| hfeng-pmm2 | INDEL | D1_5 | HG002compoundhet | * | 95.6235 | 92.5950 | 98.8568 | 63.0617 | 11329 | 906 | 11328 | 131 | 126 | 96.1832 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | homalt | 99.8701 | 99.8556 | 99.8846 | 63.0607 | 26964 | 39 | 25962 | 30 | 16 | 53.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 40.7379 | 29.8780 | 64.0000 | 63.0542 | 49 | 115 | 48 | 27 | 26 | 96.2963 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.7502 | 96.6355 | 96.8652 | 63.0530 | 3102 | 108 | 3090 | 100 | 94 | 94.0000 | |
| ckim-isaac | SNP | * | map_l100_m1_e0 | * | 78.4897 | 64.6727 | 99.8146 | 63.0504 | 46825 | 25578 | 46832 | 87 | 22 | 25.2874 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002compoundhet | * | 96.8842 | 94.7609 | 99.1047 | 63.0486 | 11594 | 641 | 11623 | 105 | 78 | 74.2857 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6183 | 99.6183 | 99.6183 | 63.0465 | 522 | 2 | 522 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5862 | 100.0000 | 99.1758 | 63.0457 | 361 | 0 | 361 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 63.0435 | 120 | 2 | 119 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.9932 | 85.7143 | 99.2647 | 63.0435 | 144 | 24 | 135 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 63.0435 | 120 | 2 | 119 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | HG002compoundhet | * | 81.2573 | 87.2016 | 76.0717 | 63.0432 | 7781 | 1142 | 7808 | 2456 | 275 | 11.1971 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 44.2793 | 38.8052 | 51.5516 | 63.0411 | 1546 | 2438 | 1545 | 1452 | 1385 | 95.3857 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.6540 | 95.9541 | 99.4153 | 63.0411 | 5099 | 215 | 5101 | 30 | 22 | 73.3333 | |
| hfeng-pmm2 | SNP | ti | map_l100_m0_e0 | homalt | 99.7813 | 99.7685 | 99.7941 | 63.0398 | 7756 | 18 | 7756 | 16 | 7 | 43.7500 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.8261 | 99.6816 | 99.9710 | 63.0365 | 3444 | 11 | 3444 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | * | 84.9902 | 80.5843 | 89.9058 | 63.0348 | 1324 | 319 | 1336 | 150 | 106 | 70.6667 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 64.2360 | 57.8454 | 72.2140 | 63.0306 | 10562 | 7697 | 13647 | 5251 | 3074 | 58.5412 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8985 | 99.2195 | 98.5796 | 63.0301 | 15637 | 123 | 15477 | 223 | 202 | 90.5830 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.4550 | 92.3423 | 96.6667 | 63.0282 | 205 | 17 | 203 | 7 | 7 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.3004 | 96.9154 | 97.6884 | 63.0249 | 974 | 31 | 972 | 23 | 16 | 69.5652 | |
| hfeng-pmm1 | SNP | ti | map_l100_m0_e0 | homalt | 99.7619 | 99.7170 | 99.8069 | 63.0178 | 7752 | 22 | 7752 | 15 | 6 | 40.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4756 | 99.0317 | 99.9234 | 63.0172 | 27410 | 268 | 27401 | 21 | 8 | 38.0952 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2540 | 95.0409 | 99.5726 | 63.0163 | 8835 | 461 | 8854 | 38 | 38 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.7961 | 99.2900 | 96.3466 | 63.0116 | 1818 | 13 | 1846 | 70 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | het | 97.5719 | 96.3280 | 98.8483 | 63.0112 | 3043 | 116 | 3004 | 35 | 15 | 42.8571 | |
| ckim-vqsr | INDEL | D6_15 | HG002complexvar | homalt | 99.4466 | 99.9145 | 98.9831 | 63.0094 | 1168 | 1 | 1168 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.4466 | 99.9145 | 98.9831 | 63.0094 | 1168 | 1 | 1168 | 12 | 11 | 91.6667 | |