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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1014 1015 1016 1017 1018 1019 1020 1021 1022 ... 1720 1721 » 50851-50900 / 86044 show all
jlack-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.8088	99.6183	100.0000	63.4198	522	2	522	0	0
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5635	99.6780	99.4493	63.4150	2167	7	2167	12	0	0.0000
ltrigg-rtg1	SNP	*	map_l125_m1_e0	hetalt	100.0000	100.0000	100.0000	63.4146	30	0	30	0	0
ltrigg-rtg1	SNP	tv	map_l125_m1_e0	hetalt	100.0000	100.0000	100.0000	63.4146	30	0	30	0	0
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	63.4146	45	0	45	0	0
bgallagher-sentieon	SNP	*	map_l125_m1_e0	homalt	99.7275	99.5741	99.8813	63.4132	16833	72	16833	20	15	75.0000
ltrigg-rtg1	SNP	tv	map_l100_m2_e1	homalt	99.8548	99.7850	99.9246	63.4100	9282	20	9281	7	4	57.1429
mlin-fermikit	INDEL	D1_5	HG002compoundhet	het	59.9144	80.4398	47.7343	63.4097	1390	338	1380	1511	1467	97.0880
hfeng-pmm1	SNP	ti	map_l100_m1_e0	het	99.3951	99.0615	99.7309	63.4093	29661	281	29654	80	20	25.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.6119	95.3351	100.0000	63.4087	5661	277	5698	0	0
ckim-dragen	INDEL	D1_5	*	homalt	99.6542	99.8998	99.4098	63.4062	48877	49	48847	290	286	98.6207
gduggal-snapplat	SNP	ti	map_l100_m0_e0	homalt	93.7346	88.3329	99.8399	63.4054	6867	907	6860	11	11	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8372	98.8372	98.8372	63.4043	255	3	255	3	3	100.0000
asubramanian-gatk	INDEL	I1_5	*	hetalt	96.2314	93.2470	99.4133	63.4018	10439	756	10505	62	58	93.5484
hfeng-pmm2	SNP	*	map_l100_m2_e0	homalt	99.8674	99.8728	99.8619	63.3992	27488	35	27488	38	19	50.0000
ltrigg-rtg1	SNP	tv	map_l100_m2_e0	homalt	99.8534	99.7829	99.9239	63.3991	9194	20	9193	7	4	57.1429
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7223	99.4893	99.9565	63.3985	11493	59	11493	5	5	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7223	99.4893	99.9565	63.3985	11493	59	11493	5	5	100.0000
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	95.1351	100.0000	90.7216	63.3962	68	0	88	9	4	44.4444
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5579	99.4508	99.6651	63.3945	11047	61	11012	37	16	43.2432
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.8124	95.6628	97.9899	63.3939	3132	142	3120	64	61	95.3125
raldana-dualsentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3348	99.0173	99.6544	63.3928	27406	272	27397	95	13	13.6842
hfeng-pmm2	SNP	*	map_l100_m2_e1	homalt	99.8687	99.8741	99.8633	63.3911	27761	35	27761	38	19	50.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.7240	96.4410	99.0416	63.3898	6097	225	6097	59	50	84.7458
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.7240	96.4410	99.0416	63.3898	6097	225	6097	59	50	84.7458
raldana-dualsentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.4574	95.0409	100.0000	63.3890	8835	461	8854	0	0
ndellapenna-hhga	SNP	ti	map_l100_m2_e0	*	99.3576	98.8807	99.8392	63.3838	48413	548	48415	78	40	51.2821
ndellapenna-hhga	SNP	ti	map_l100_m2_e1	*	99.3624	98.8906	99.8388	63.3822	48936	549	48938	79	40	50.6329
ltrigg-rtg2	INDEL	I6_15	HG002compoundhet	homalt	53.2110	93.5484	37.1795	63.3803	29	2	29	49	49	100.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	75.1220	60.6299	98.7179	63.3803	77	50	77	1	1	100.0000
hfeng-pmm2	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0538	98.3322	99.7862	63.3791	17275	293	17266	37	4	10.8108
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7487	99.4987	100.0000	63.3764	397	2	397	0	0
hfeng-pmm1	SNP	*	map_l100_m2_e0	homalt	99.8583	99.8438	99.8728	63.3749	27480	43	27480	35	17	48.5714
ciseli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	75.4245	87.3154	66.3840	63.3729	7331	1065	7751	3925	1802	45.9108
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	71.3875	89.5226	59.3622	63.3723	1444	169	1452	994	947	95.2716
eyeh-varpipe	INDEL	*	*	*	92.5779	91.3854	93.8021	63.3717	314861	29681	317111	20953	20114	95.9958
hfeng-pmm1	SNP	*	map_l100_m2_e1	homalt	99.8597	99.8453	99.8740	63.3660	27753	43	27753	35	17	48.5714
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	63.3659	786	0	825	0	0
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	56.2300	84.6154	42.1053	63.3609	143	26	56	77	75	97.4026
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.3046	98.8920	99.7207	63.3572	357	4	357	1	1	100.0000
anovak-vg	INDEL	D16_PLUS	HG002complexvar	homalt	75.3150	76.8166	73.8710	63.3570	222	67	229	81	59	72.8395
jlack-gatk	INDEL	D6_15	*	het	96.7124	98.9476	94.5760	63.3561	11470	122	11421	655	345	52.6718
gduggal-snapvard	SNP	ti	map_l100_m0_e0	homalt	97.3605	95.2148	99.6052	63.3538	7402	372	7316	29	23	79.3103
gduggal-bwaplat	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	82.0473	70.6121	97.9019	63.3528	3311	1378	3313	71	11	15.4930
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	98.0250	99.3414	96.7430	63.3526	2715	18	2703	91	87	95.6044
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.5913	99.6283	91.8687	63.3516	3752	14	3751	332	329	99.0964
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.5913	99.6283	91.8687	63.3516	3752	14	3751	332	329	99.0964
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	63.0485	48.1459	91.3123	63.3492	4025	4335	4015	382	317	82.9843
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	63.0485	48.1459	91.3123	63.3492	4025	4335	4015	382	317	82.9843
ltrigg-rtg1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.2267	97.4545	99.0111	63.3439	804	21	801	8	8	100.0000

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