PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50501-50550 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.3509 | 67.3423 | 90.8537 | 63.9164 | 299 | 145 | 298 | 30 | 27 | 90.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.1207 | 98.7596 | 99.4845 | 63.9164 | 4777 | 60 | 4825 | 25 | 19 | 76.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.2248 | 99.2248 | 99.2248 | 63.9161 | 256 | 2 | 256 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l125_m2_e0 | homalt | 98.3080 | 96.6808 | 99.9909 | 63.9160 | 10981 | 377 | 10979 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 52.3943 | 37.9325 | 84.6777 | 63.9143 | 5229 | 8556 | 5018 | 908 | 475 | 52.3128 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.5295 | 93.9130 | 95.1542 | 63.9110 | 216 | 14 | 216 | 11 | 9 | 81.8182 | |
| hfeng-pmm2 | SNP | * | map_l100_m0_e0 | homalt | 99.7504 | 99.7418 | 99.7590 | 63.9103 | 11590 | 30 | 11590 | 28 | 11 | 39.2857 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e1 | homalt | 99.5933 | 99.3025 | 99.8858 | 63.9101 | 18365 | 129 | 18365 | 21 | 13 | 61.9048 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.5480 | 89.9642 | 99.6241 | 63.9077 | 251 | 28 | 265 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 69.4306 | 91.0941 | 56.0913 | 63.9073 | 3222 | 315 | 5258 | 4116 | 3904 | 94.8494 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | homalt | 99.5892 | 99.2954 | 99.8846 | 63.9034 | 18180 | 129 | 18180 | 21 | 13 | 61.9048 | |
| cchapple-custom | SNP | ti | map_l125_m0_e0 | homalt | 97.6182 | 95.3685 | 99.9767 | 63.8992 | 4283 | 208 | 4282 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8473 | 98.1095 | 99.5964 | 63.8980 | 986 | 19 | 987 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | D16_PLUS | HG002complexvar | * | 96.9398 | 95.6786 | 98.2346 | 63.8971 | 1572 | 71 | 1558 | 28 | 21 | 75.0000 | |
| rpoplin-dv42 | SNP | ti | map_l100_m1_e0 | het | 99.3390 | 99.1350 | 99.5438 | 63.8948 | 29683 | 259 | 29675 | 136 | 82 | 60.2941 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 68.7702 | 67.0305 | 70.6027 | 63.8943 | 3808 | 1873 | 5471 | 2278 | 1700 | 74.6269 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 36.3779 | 31.5041 | 43.0357 | 63.8943 | 155 | 337 | 241 | 319 | 270 | 84.6395 | |
| ckim-dragen | SNP | * | map_l125_m2_e0 | homalt | 99.5644 | 99.3151 | 99.8150 | 63.8939 | 17256 | 119 | 17261 | 32 | 29 | 90.6250 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.3260 | 97.7233 | 98.9362 | 63.8924 | 558 | 13 | 558 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.1855 | 22.9755 | 36.4514 | 63.8922 | 610 | 2045 | 982 | 1712 | 1115 | 65.1285 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2113 | 99.3725 | 99.0508 | 63.8916 | 18052 | 114 | 18052 | 173 | 163 | 94.2197 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2113 | 99.3725 | 99.0508 | 63.8916 | 18052 | 114 | 18052 | 173 | 163 | 94.2197 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.5234 | 96.3184 | 76.9043 | 63.8905 | 34115 | 1304 | 34337 | 10312 | 215 | 2.0850 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 24.8175 | 14.2061 | 98.0769 | 63.8889 | 51 | 308 | 51 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0583 | 99.0196 | 97.1154 | 63.8889 | 101 | 1 | 101 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3571 | 90.9091 | 98.0769 | 63.8889 | 50 | 5 | 51 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.2264 | 92.7273 | 100.0000 | 63.8889 | 51 | 4 | 52 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4403 | 91.3876 | 97.7041 | 63.8876 | 764 | 72 | 766 | 18 | 15 | 83.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5374 | 99.6524 | 99.4226 | 63.8866 | 860 | 3 | 861 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5044 | 99.0738 | 99.9389 | 63.8841 | 11445 | 107 | 11445 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5044 | 99.0738 | 99.9389 | 63.8841 | 11445 | 107 | 11445 | 7 | 7 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | * | het | 96.8499 | 96.8344 | 96.8654 | 63.8824 | 3059 | 100 | 5068 | 164 | 133 | 81.0976 | |
| egarrison-hhga | SNP | * | map_l100_m1_e0 | het | 99.3656 | 98.9352 | 99.7999 | 63.8790 | 44876 | 483 | 44877 | 90 | 31 | 34.4444 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.1054 | 98.7352 | 99.4784 | 63.8767 | 13583 | 174 | 13541 | 71 | 56 | 78.8732 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.1054 | 98.7352 | 99.4784 | 63.8767 | 13583 | 174 | 13541 | 71 | 56 | 78.8732 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | homalt | 95.9129 | 92.2138 | 99.9212 | 63.8760 | 25380 | 2143 | 25364 | 20 | 15 | 75.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 91.6942 | 85.1429 | 99.3377 | 63.8756 | 149 | 26 | 150 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 93.3619 | 94.7826 | 91.9831 | 63.8720 | 218 | 12 | 218 | 19 | 12 | 63.1579 | |
| ndellapenna-hhga | INDEL | I16_PLUS | * | * | 92.8570 | 90.4814 | 95.3607 | 63.8712 | 5770 | 607 | 5776 | 281 | 194 | 69.0391 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | homalt | 95.9332 | 92.2507 | 99.9220 | 63.8706 | 25642 | 2154 | 25625 | 20 | 15 | 75.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8496 | 98.7433 | 98.9562 | 63.8705 | 3850 | 49 | 3887 | 41 | 14 | 34.1463 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 82.3039 | 88.8889 | 76.6272 | 63.8696 | 536 | 67 | 518 | 158 | 158 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0333 | 99.7835 | 98.2942 | 63.8675 | 461 | 1 | 461 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.0007 | 98.1907 | 97.8114 | 63.8674 | 3799 | 70 | 3754 | 84 | 80 | 95.2381 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 63.8655 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 67.4157 | 65.2174 | 69.7674 | 63.8655 | 30 | 16 | 30 | 13 | 13 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.4560 | 96.0456 | 98.9084 | 63.8644 | 6072 | 250 | 6071 | 67 | 60 | 89.5522 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.4560 | 96.0456 | 98.9084 | 63.8644 | 6072 | 250 | 6071 | 67 | 60 | 89.5522 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 65.7740 | 85.6857 | 53.3715 | 63.8640 | 26117 | 4363 | 26223 | 22910 | 22642 | 98.8302 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 65.7740 | 85.6857 | 53.3715 | 63.8640 | 26117 | 4363 | 26223 | 22910 | 22642 | 98.8302 | |